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The map label for this gene is dnaQ [H]

Identifier: 238026771

GI number: 238026771

Start: 1238117

End: 1238839

Strand: Reverse

Name: dnaQ [H]

Synonym: bglu_1g11290

Alternate gene names: 238026771

Gene position: 1238839-1238117 (Counterclockwise)

Preceding gene: 238026772

Following gene: 238026769

Centisome position: 31.71

GC content: 67.22

Gene sequence:

>723_bases
ATGCGTCAGATCATCCTCGATACCGAAACCACCGGCCTCAACGCCCGCGCGGGCGACCGCATCATCGAAATCGGCTGCGT
CGAAATGCTGAACCGCCGGCTGACCGGCAACAATCTGCACTTCTACGTGAACCCGGAGCGCGACAGCGATCCGGGCGCAC
TCGCCGTGCACGGGCTCACCACCGAATTCCTCAGCGACAAGCCGAAGTTCGCCGAGATCGCCCAGGCGCTGTGCGATTTC
GTGCGCGGCGGCGAACTGATCATCCACAACGCCCCGTTCGACATCGGCTTCATCGACGCCGAACTGGAGCGGCTCGGCAT
GCCGCCGCTGCTCGAGCACTGCAACGGCGTGATCGATACGCTGGTGCAGGCCAAGTCGATGTTCCCCGGCAAGCGCAATT
CGCTCGACGCGCTGTGCGACCGGTTCGGCATCAGCAACGCGCACCGCACGCTGCACGGCGCGCTGCTCGATTCCGAACTG
CTCGCCGAGGTCTATCTGGCCATGACGCGCGGCCAGGAGAGCCTCGTGATCGACATGCTCGGCGACACCGGCGACCGCGG
CGGCGAGACGGGCGGCTCGCGCGTGTCGTTCGCCTCGCTCGATCTACCGGTGATCGCGGCGAGCGAGCAGGAGCTCGCCG
CGCATCAGGCGCAGCTCGACGATCTCGACAAGTCGGTCAAGGGCGCCTGCGTCTGGCGCCAGGAGGCGGCGCCGCCCGCC
TGA

Upstream 100 bases:

>100_bases
CGCCGCCGGCCGCGCCGCGAGCCCGCATTCCGCCGCGCCGGGGCCGCTGCCCGGCGCCGCCCTGTCCGGCCCGCGCGCCG
GCACCTTTTGAAGAACCGCA

Downstream 100 bases:

>100_bases
GCGGGCGGCATCCTCGCCGGCGCGGCCCGCCCCGCGGCCGCGCCGGCTCCTGGTTCGCTGCCCCGCGCTCAGCCGCGCGG
CTGCAGCGCGATCACGGCCA

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEIAQALCDF
VRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVIDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
LAEVYLAMTRGQESLVIDMLGDTGDRGGETGGSRVSFASLDLPVIAASEQELAAHQAQLDDLDKSVKGACVWRQEAAPPA

Sequences:

>Translated_240_residues
MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEIAQALCDF
VRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVIDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
LAEVYLAMTRGQESLVIDMLGDTGDRGGETGGSRVSFASLDLPVIAASEQELAAHQAQLDDLDKSVKGACVWRQEAAPPA
>Mature_240_residues
MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEIAQALCDF
VRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVIDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
LAEVYLAMTRGQESLVIDMLGDTGDRGGETGGSRVSFASLDLPVIAASEQELAAHQAQLDDLDKSVKGACVWRQEAAPPA

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=238, Percent_Identity=53.781512605042, Blast_Score=253, Evalue=8e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 25993; Mature: 25993

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLT
CCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCH
TEFLSDKPKFAEIAQALCDFVRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVIDT
HHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
LVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML
HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
GDTGDRGGETGGSRVSFASLDLPVIAASEQELAAHQAQLDDLDKSVKGACVWRQEAAPPA
CCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
>Mature Secondary Structure
MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLT
CCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCH
TEFLSDKPKFAEIAQALCDFVRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVIDT
HHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
LVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML
HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
GDTGDRGGETGGSRVSFASLDLPVIAASEQELAAHQAQLDDLDKSVKGACVWRQEAAPPA
CCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3023634; 6316347; 3540531; 9278503; 1575709 [H]