| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is proP [H]
Identifier: 238026769
GI number: 238026769
Start: 1235638
End: 1237119
Strand: Reverse
Name: proP [H]
Synonym: bglu_1g11270
Alternate gene names: 238026769
Gene position: 1237119-1235638 (Counterclockwise)
Preceding gene: 238026771
Following gene: 238026757
Centisome position: 31.67
GC content: 68.96
Gene sequence:
>1482_bases TTGACTGCCTCACACGTCAGCCCCTCCGCTGCTTGCGCGTCGGCCACCGACGCCCCCGTCACCGTCAGCGACATCACCGT GGTCGACCAGAGCCTGCTCAAGCGCGCGGTGCGCGCGATGGCCATCGGCAACGCCATGGAATGGTTCGACTTCGGCGTGT ACAGCTACATCGCCGTCACGCTCGGCCAGGTGTTCTTCCCCTCCAGCAACCCGTCCGCGCAGCTGCTCGCCACGTTCGGC ACGTTCGCGGCCGCGTTCCTGGTGCGCCCGCTCGGCGGCATGGTGTTCGGCCCGCTCGGCGACCGCATCGGCCGTCAGCG CGTGCTGGCCATGACGATGATCATGATGGCGCTCGGCACGTTCTCGATCGGCCTGATTCCGAGCTACCAATCGATCGGCA TCCTCGCACCGGTGCTGCTGCTGGTCGCGCGCCTCGTGCAGGGCTTCTCGACGGGCGGCGAGTACGGCGGGGCCGCCACC TTCATCGCCGAATTCTCCACCGACAAGCGCCGCGGCTTCATGGGCAGCTTTCTCGAATTCGGCACGCTGATCGGCTACGT GCTCGGCGCGGGCACGGTCGCGGCGCTGGCGGCGCTGCTGCCGCATGACGCCCTGCTGTCGTGGGGCTGGCGCGTGCCGT TCCTGGTGGCCGGCCCGCTCGGCCTGATCGGGCTCTACATCCGCATGAAGCTCGAGGAGACGCCGGCCTTCAAGCGCCAG GCCGAACTGCGCGAGGCGCAGGACAAGTCGATGCCGAAGCTCAAGTTCACCGAGACCCTCGGCCGCCACTGGCGCGCGAT GCTGCTCTGCGTGGGCCTCGTGCTGATCTTCAACGTGACCGACTACATGGCGCTGTCGTACCTGCCGAGCTATCTGTCGT CGACGCTGCACTTCAACGAGACGCACGGCCTGCTGCTGGTGCTGCTCGTGATGGTGCTGATGATGCCGATGACGCTCGCC GCCGGCCGCCTGTCCGACACGGTCGGCCGCAAGCCGGTGATGCTGGCCGGCTGTCTCGGCCTGATCGCGCTGTCGATCCC GGCGCTGATGCTGATCCGCACGGGCGAAATGCTGCCGGTGTTCGGCGGGCTGATGATCCTCGGCGTGCTGCTCTCGTGCT TCTGCGGCGTGATGCCGTCGGCGCTGCCGGCGCTGTTCCCGACCGAGATCCGCTACGGCGCGCTCGCGATCGGCTTCAAC ATCTCGGTGTCGCTGTTCGGCGGCACGACGCCGCTCGTCACGGCGTGGCTGGTCGATCGCACCGGCAACCTGATGATGCC CGCCTACTACCTGATGGGGGCCGCCGTGATCGGCGCGGTGTCGGTGCTCACGCTGCGCGAGACGGCACGCCAGCCGCTGG AAGGCTCGCCGCCCGCCGTCGCCTCGCGCCGCGAAGCGCATGCGCTGGTGCGCGAACTGCGCGAGCAGGCAACCAACGAC GACAGCCCCAGCTACCCGGGCGTGTCGGCCGCGCGGGCATAA
Upstream 100 bases:
>100_bases CCGACGTTCCGTGCCGCCACGCCGCTGCGCTCCCGGCAAACCGTGGCGAAACGCGTGCCGCCAGGCGCATGCTTCGTCCG CTGTCAAAGGAGCCCAAATC
Downstream 100 bases:
>100_bases GCCCGGCGGCTAGCCGCCGCCCGCCCCGCTCCACGACGCCGCGCCGACCGCTCCCGGTCGGCGCGGCGTTTTTTATCGGC GGGCCGCGCTGCCGCCGGCC
Product: major facilitator superfamily transporter
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Proline porter II; PPII [H]
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MTASHVSPSAACASATDAPVTVSDITVVDQSLLKRAVRAMAIGNAMEWFDFGVYSYIAVTLGQVFFPSSNPSAQLLATFG TFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMALGTFSIGLIPSYQSIGILAPVLLLVARLVQGFSTGGEYGGAAT FIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGTVAALAALLPHDALLSWGWRVPFLVAGPLGLIGLYIRMKLEETPAFKRQ AELREAQDKSMPKLKFTETLGRHWRAMLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFNETHGLLLVLLVMVLMMPMTLA AGRLSDTVGRKPVMLAGCLGLIALSIPALMLIRTGEMLPVFGGLMILGVLLSCFCGVMPSALPALFPTEIRYGALAIGFN ISVSLFGGTTPLVTAWLVDRTGNLMMPAYYLMGAAVIGAVSVLTLRETARQPLEGSPPAVASRREAHALVRELREQATND DSPSYPGVSAARA
Sequences:
>Translated_493_residues MTASHVSPSAACASATDAPVTVSDITVVDQSLLKRAVRAMAIGNAMEWFDFGVYSYIAVTLGQVFFPSSNPSAQLLATFG TFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMALGTFSIGLIPSYQSIGILAPVLLLVARLVQGFSTGGEYGGAAT FIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGTVAALAALLPHDALLSWGWRVPFLVAGPLGLIGLYIRMKLEETPAFKRQ AELREAQDKSMPKLKFTETLGRHWRAMLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFNETHGLLLVLLVMVLMMPMTLA AGRLSDTVGRKPVMLAGCLGLIALSIPALMLIRTGEMLPVFGGLMILGVLLSCFCGVMPSALPALFPTEIRYGALAIGFN ISVSLFGGTTPLVTAWLVDRTGNLMMPAYYLMGAAVIGAVSVLTLRETARQPLEGSPPAVASRREAHALVRELREQATND DSPSYPGVSAARA >Mature_492_residues TASHVSPSAACASATDAPVTVSDITVVDQSLLKRAVRAMAIGNAMEWFDFGVYSYIAVTLGQVFFPSSNPSAQLLATFGT FAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMALGTFSIGLIPSYQSIGILAPVLLLVARLVQGFSTGGEYGGAATF IAEFSTDKRRGFMGSFLEFGTLIGYVLGAGTVAALAALLPHDALLSWGWRVPFLVAGPLGLIGLYIRMKLEETPAFKRQA ELREAQDKSMPKLKFTETLGRHWRAMLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFNETHGLLLVLLVMVLMMPMTLAA GRLSDTVGRKPVMLAGCLGLIALSIPALMLIRTGEMLPVFGGLMILGVLLSCFCGVMPSALPALFPTEIRYGALAIGFNI SVSLFGGTTPLVTAWLVDRTGNLMMPAYYLMGAAVIGAVSVLTLRETARQPLEGSPPAVASRREAHALVRELREQATNDD SPSYPGVSAARA
Specific function: Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=481, Percent_Identity=49.6881496881497, Blast_Score=511, Evalue=1e-146, Organism=Escherichia coli, GI1788292, Length=433, Percent_Identity=31.6397228637413, Blast_Score=210, Evalue=2e-55, Organism=Escherichia coli, GI1788942, Length=401, Percent_Identity=34.4139650872818, Blast_Score=204, Evalue=2e-53, Organism=Escherichia coli, GI1789941, Length=426, Percent_Identity=33.5680751173709, Blast_Score=192, Evalue=5e-50, Organism=Escherichia coli, GI87082231, Length=435, Percent_Identity=22.5287356321839, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI87082404, Length=367, Percent_Identity=23.1607629427793, Blast_Score=62, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR015041 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF08946 Osmo_CC; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52561; Mature: 52430
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASHVSPSAACASATDAPVTVSDITVVDQSLLKRAVRAMAIGNAMEWFDFGVYSYIAVT CCCCCCCCHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LGQVFFPSSNPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMALGT HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHH FSIGLIPSYQSIGILAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH GTLIGYVLGAGTVAALAALLPHDALLSWGWRVPFLVAGPLGLIGLYIRMKLEETPAFKRQ HHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHCHHHHHHHHHHEEECCCCHHHHH AELREAQDKSMPKLKFTETLGRHWRAMLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFNE HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC THGLLLVLLVMVLMMPMTLAAGRLSDTVGRKPVMLAGCLGLIALSIPALMLIRTGEMLPV CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH FGGLMILGVLLSCFCGVMPSALPALFPTEIRYGALAIGFNISVSLFGGTTPLVTAWLVDR HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEEEEEEEEECCCHHHHHHHHHHC TGNLMMPAYYLMGAAVIGAVSVLTLRETARQPLEGSPPAVASRREAHALVRELREQATND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC DSPSYPGVSAARA CCCCCCCCCCCCC >Mature Secondary Structure TASHVSPSAACASATDAPVTVSDITVVDQSLLKRAVRAMAIGNAMEWFDFGVYSYIAVT CCCCCCCHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LGQVFFPSSNPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMALGT HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHH FSIGLIPSYQSIGILAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH GTLIGYVLGAGTVAALAALLPHDALLSWGWRVPFLVAGPLGLIGLYIRMKLEETPAFKRQ HHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHCHHHHHHHHHHEEECCCCHHHHH AELREAQDKSMPKLKFTETLGRHWRAMLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFNE HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC THGLLLVLLVMVLMMPMTLAAGRLSDTVGRKPVMLAGCLGLIALSIPALMLIRTGEMLPV CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH FGGLMILGVLLSCFCGVMPSALPALFPTEIRYGALAIGFNISVSLFGGTTPLVTAWLVDR HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEEEEEEEEECCCHHHHHHHHHHC TGNLMMPAYYLMGAAVIGAVSVLTLRETARQPLEGSPPAVASRREAHALVRELREQATND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC DSPSYPGVSAARA CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]