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The map label for this gene is dgdR [H]

Identifier: 238026757

GI number: 238026757

Start: 1225152

End: 1226000

Strand: Reverse

Name: dgdR [H]

Synonym: bglu_1g11150

Alternate gene names: 238026757

Gene position: 1226000-1225152 (Counterclockwise)

Preceding gene: 238026769

Following gene: 238026754

Centisome position: 31.38

GC content: 72.32

Gene sequence:

>849_bases
ATGCGTCCGTTACCGCCCGAGCTGCTGCGCAGCTTCGTCGCCGTCGCTCAGACCGGCAGCTTCACCGCCGCGTCGGAGCG
CGTCAATCTCTCGCAATCCACCGTCAGCCAGCATATCCGCCGGCTCGAGGAACTGCTCGACCGGCCGCTGTTCGAGCGCG
ACACGCGCAACGTGCGGCTGTCGGCCAACGGGGAGGCGCTGTACCGCTACGCGGGCCGCATTCTGGAACTGATGGACGAG
GCGGTGATGTCGGTGTGCGGCCCGCCGCTGTCAGGCAAGGTGCGGCTCGGCATGTCCGAGGATTTCGCCTCGACCCATCT
GGCCGCCGCGCTCGCCAGCTTCATCCAGCGCAACCCCGGGATCGAGCTGGAAATCGCCACCGGGCTGTCCGGCGACCTGT
TCGCCGCGCTCGACGACGGCCGCCACGACCTGGTGTTCGCCAAGCGCATCGCCGGCAGCCGGCGCGGCCGCGTGATCCGC
ACCGAGCCGCTCTACTGGTGTACCGGGCCGGGCTCGCCGATCACGGGACGCGAGCCGGTGCTGCCGCTCGCGCTGCACCC
GGAGCCGAGCGTGTCGCGGCGGCGCGTGCTGGAAACGCTCGACGCGATCGGCCAGCCCTATCGGATCGCCGTATCGAGCA
GCAGCATCGCGGCGCTGCGGGCCGCCGCGGCGGCCGGGCTCGGGGTGTCGGCGTTCGCCGGCTACGTGATTCCGCAGGGC
CTGGCCCGGCTTGATGCCGGCCTGCCCGCGCTCGGCGACCTCGAATACGTGATCGACCGGCCCGCGTCCGCCTCGCGCTC
CGCCCTCGCGCTCGAGGCCACGCTGGTGGCGGCCGCCGCCGAGTTCTGA

Upstream 100 bases:

>100_bases
GCCGGCCGCCGCGCCCGCCGGCCAAGCGGGCGCGGCCCGCCGGCCCGGCGCCCGCCCTCGGCCGCCGGCCCTCGCCGGCG
GCGCTTCCCGGGATTTCGCC

Downstream 100 bases:

>100_bases
GCCGGCACGCGGCACGGCCGGTTTGCGGCCGGCCTGGCTTGGGCCGGCCCGCCCTCGGCAGCGCAGCGGCGCCCGCCTCC
GCGGTGGGCGCGCGGCGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRLSANGEALYRYAGRILELMDE
AVMSVCGPPLSGKVRLGMSEDFASTHLAAALASFIQRNPGIELEIATGLSGDLFAALDDGRHDLVFAKRIAGSRRGRVIR
TEPLYWCTGPGSPITGREPVLPLALHPEPSVSRRRVLETLDAIGQPYRIAVSSSSIAALRAAAAAGLGVSAFAGYVIPQG
LARLDAGLPALGDLEYVIDRPASASRSALALEATLVAAAAEF

Sequences:

>Translated_282_residues
MRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRLSANGEALYRYAGRILELMDE
AVMSVCGPPLSGKVRLGMSEDFASTHLAAALASFIQRNPGIELEIATGLSGDLFAALDDGRHDLVFAKRIAGSRRGRVIR
TEPLYWCTGPGSPITGREPVLPLALHPEPSVSRRRVLETLDAIGQPYRIAVSSSSIAALRAAAAAGLGVSAFAGYVIPQG
LARLDAGLPALGDLEYVIDRPASASRSALALEATLVAAAAEF
>Mature_282_residues
MRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRLSANGEALYRYAGRILELMDE
AVMSVCGPPLSGKVRLGMSEDFASTHLAAALASFIQRNPGIELEIATGLSGDLFAALDDGRHDLVFAKRIAGSRRGRVIR
TEPLYWCTGPGSPITGREPVLPLALHPEPSVSRRRVLETLDAIGQPYRIAVSSSSIAALRAAAAAGLGVSAFAGYVIPQG
LARLDAGLPALGDLEYVIDRPASASRSALALEATLVAAAAEF

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=35.0393700787402, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787806, Length=138, Percent_Identity=36.231884057971, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=34.7222222222222, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=29.2035398230088, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=223, Percent_Identity=27.8026905829596, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=32.8671328671329, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787589, Length=169, Percent_Identity=32.5443786982249, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=241, Percent_Identity=25.7261410788382, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789639, Length=128, Percent_Identity=33.59375, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=254, Percent_Identity=26.3779527559055, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=120, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693193, Length=121, Percent_Identity=31.404958677686, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788481, Length=246, Percent_Identity=28.8617886178862, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30068; Mature: 30068

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRL
CCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
SANGEALYRYAGRILELMDEAVMSVCGPPLSGKVRLGMSEDFASTHLAAALASFIQRNPG
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCC
IELEIATGLSGDLFAALDDGRHDLVFAKRIAGSRRGRVIRTEPLYWCTGPGSPITGREPV
CEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCEEEECCCCCCCCCCCCC
LPLALHPEPSVSRRRVLETLDAIGQPYRIAVSSSSIAALRAAAAAGLGVSAFAGYVIPQG
EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LARLDAGLPALGDLEYVIDRPASASRSALALEATLVAAAAEF
HHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRL
CCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
SANGEALYRYAGRILELMDEAVMSVCGPPLSGKVRLGMSEDFASTHLAAALASFIQRNPG
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCC
IELEIATGLSGDLFAALDDGRHDLVFAKRIAGSRRGRVIRTEPLYWCTGPGSPITGREPV
CEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCEEEECCCCCCCCCCCCC
LPLALHPEPSVSRRRVLETLDAIGQPYRIAVSSSSIAALRAAAAAGLGVSAFAGYVIPQG
EEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LARLDAGLPALGDLEYVIDRPASASRSALALEATLVAAAAEF
HHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]