| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ybiO [H]
Identifier: 238026740
GI number: 238026740
Start: 1204622
End: 1207111
Strand: Reverse
Name: ybiO [H]
Synonym: bglu_1g10980
Alternate gene names: 238026740
Gene position: 1207111-1204622 (Counterclockwise)
Preceding gene: 238026744
Following gene: 238026738
Centisome position: 30.9
GC content: 73.05
Gene sequence:
>2490_bases GTGCTCACGCCGCAGCAGGCGCAACAGGCGCTCTCGGTACTCGAAAATCCGCGCCAGCGCGCGCAATTCGAATCGACGCT GCGCGCGATCGCCGCCGCCGGGGCGCTCAGCACGCCCGCCGTGCCGGCCAGCGCCGCCCATGCGGCCCCCGCCGCGAGCG CGGCATCGGCCGCCTCGAGCCCCACCGCGTTCCTCAGCAACGGACTCGCCTCGCAGCTGATGCATCAGGGCTCGCACTGG GCCGCGCAGATCGGCCGCGCGCTGCGCGACTCGATGCGCTCGCTGCTCGACGTGGGCTCGGTGGGCGCCTGGTGGCGCGC GAAGCTCACCCATGCCGACGAGCGCGCAGATTTCGTCAGCTTCCTGCAATTGATCGTCGCGGCGCTGGCGCCCGCGCTGC TGATCGAATGGTTTGCGCGCCGGCTGTTGCGGCGCGCGCTCGCGGCACTGGCCGCGCGCCGCGCCGGCGGCGGCCCGGCC GGCGAGCCGTCGGCCGGGGCCTCGCACGCGTCGGCCGACGGCTCGCCGGAGCCGGCCGCGGCCGCGGCCGACGCCGCCGC GCTCGCCGCGGCCGGCACCGGCGCGAGCCCCGCGCCGCCGCCCGACGCGGCCGATCAAGCGCGGCGCGCGGAACTCGCCT CGCGCGGGCGCGGCCAGGCGCTGCGCCACAGCACGCTGCTGCAACGCGTGCCGCGCGCGCTGGTGAGCCTCGCGCTGCGT GCGGTTTCGCTGCTGCTGTTCGTCGGCGTGGCGACCCTGATGATGTCGATCGTGACCGACGACGACACCCCCGCCGCCCT CGCGATCGGCTCGCTGGTGGACATCTACGTGATCTGCCGCGCGGTGACCATCGGCTCGCGGCTGTTCTTCCAGCCCGACG CGCCGCAGCTGCGGCTGCTGCATATCGGCGACACCTGGGCCGCGTTCGCGCAGCGATGGATCCGCCGCATCGTGCTGGTG ATCGGCGGCTGCTCGGCGGTGGTCGAGACGGCCGGCAGCTTCGGCCTCAGCGACGCGGGCCATGTCGCGCTGATGAAGGC GGTGGCGCTGGTCGGCCACGTGATGGTGTCGATCCTGATCCTGCAGTGCAGCCGGCCGGTGGCCGCCTGGATTCGCGCGC AGAGCGCCGGGCGGCCGTCGCTCGCAGTGTTCGGCAACGCGCTCGCCGACGCCTGGGCGCCGGTGGCGATCTTCGTCGTG ATGGCGCTCTGGTTCGTCTGGGCGCTCGACGTCCACAACGGCTACCACGTGCTGATCGCGCTCGGCGGGCGCTCGATCGC GGTGATGATCGGCATGCGCATCGTCTCGATCGTGGTGTTCGGCGCGCTCGTGCGCCTGTTCGAGCGGCACGGCGACGACC ACGGCACGGTGGTGCATCGCCATGCCTACCGCTACTACCCGCTGCTGCGGCAGGTGGTGTCCGTCCTGGTCGGCATCGTC ACGCTGCTGCTGTTGCTGCAGATCTGGGGCGTGCCGGTGATGCGCGCGTTCGAGGCCGGCACCATCGGCCATCGCCTCGC CTCCGCGCTGGTGACGATCGCGATCGCGGCGCTGGTCGCGCTGCTGGTGTGGGAGAGCGCGAACATCTCGATCGAGCGGC GCCTCGACCGCTGGACCCACCAGGGCAACCTGATGCGCGCCGCGCGGCTGCGCACGCTGCTGCCGATGCTGCGCACGCTG CTGTTCGTGCTGATCGCGCTGGTGGTGGTGCTGACCGGCCTGAGCGAGCTGGGCGTCAACGTCGGGCCGCTGCTGGCCGG CGCGAGCATCTTCGGCGTGGCGCTCGGCTTCGGCTCGCAGAAGCTGGTGCAGGATTTCATCACCGGCATCTTCCTGCTGA TGGAGAACGCGATGCAGGTGGGCGACTGGGTCACGCTGGCGGGCGTGTCGGGCACCGTCGAATACCTGTCGATCCGCACC GTGCGGCTGCGCGCCAGCGACGGCTCGCTGCACACGGTGCCGTTCAGCTCGGTGTCCACCGTCAACAACACCAATCGCGG GCTCGGCAACGCGGCGGTGAAGGTCAGCATCCTCCACAGCGAGGACATCGACCGCGCGGTCGAAACGCTCAAGGAGATCG GCGCCGCGCTGCGCGAGGACCCCAAGTACAAGGACGGCATCCTGTCGGATTTCGCGTACTGGGGCGTCGATTCGGTGGAC GGCGCGGCGATCACCATGTCGGGCCAGATGCAGTGCCGCGACAGCGGACGCTGGGGCGTGCAGCGCGAGTTCAACCGGCG CATCGCCGTGCTGTTCGCCGAGCGCGGCATCCGCATCGCGAACCCGCAGCGCACCGTCTACGCGCGCGACCCGGGCGAGG CCGGCGATGACGACCGGCGCGGCGAGGCCGGCGACGGCCCGCACGACGGCCGGCCTGAGGCGCGCAGCGGGCCGCCGCCG GCCGGCGGCGCGGACGCGTCGTCGGCCCGCGAGCAGGCCGGCAAGCCCTCCGCGGCCGCGCCCGACGCGCCGCCGCCGAG CAAATCCTGA
Upstream 100 bases:
>100_bases CCCAACATGCGACAGATCCTTTTCGGCTGGCTGCTCGCCATCGTCGTCACGTCGGCCCCAGGCGGCCGCGCCCGCCGCGG CCTCGGCCCCGGCAGTACCG
Downstream 100 bases:
>100_bases CGCTGCCGCGCTTCGGCCCGCGTTGGCGCGCGCCGCCCGCCGACGCGGGGCAGCCCGGCGTGATGACCTGCGCGGTGGCC TCGCCGAAGCCCGCGGCGCG
Product: mechanosensitive ion channel MscS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASSPTAFLSNGLASQLMHQGSHW AAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVSFLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPA GEPSAGASHASADGSPEPAAAAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLLHIGDTWAAFAQRWIRRIVLV IGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILILQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVV MALWFVWALDVHNGYHVLIALGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTHQGNLMRAARLRTLLPMLRTL LFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQKLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRT VRLRASDGSLHTVPFSSVSTVNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRRGEAGDGPHDGRPEARSGPPP AGGADASSAREQAGKPSAAAPDAPPPSKS
Sequences:
>Translated_829_residues MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASSPTAFLSNGLASQLMHQGSHW AAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVSFLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPA GEPSAGASHASADGSPEPAAAAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLLHIGDTWAAFAQRWIRRIVLV IGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILILQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVV MALWFVWALDVHNGYHVLIALGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTHQGNLMRAARLRTLLPMLRTL LFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQKLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRT VRLRASDGSLHTVPFSSVSTVNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRRGEAGDGPHDGRPEARSGPPP AGGADASSAREQAGKPSAAAPDAPPPSKS >Mature_829_residues MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASSPTAFLSNGLASQLMHQGSHW AAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVSFLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPA GEPSAGASHASADGSPEPAAAAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLLHIGDTWAAFAQRWIRRIVLV IGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILILQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVV MALWFVWALDVHNGYHVLIALGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTHQGNLMRAARLRTLLPMLRTL LFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQKLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRT VRLRASDGSLHTVPFSSVSTVNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRRGEAGDGPHDGRPEARSGPPP AGGADASSAREQAGKPSAAAPDAPPPSKS
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=490, Percent_Identity=28.7755102040816, Blast_Score=157, Evalue=3e-39, Organism=Escherichia coli, GI1786670, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 87396; Mature: 87396
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASS CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCC PTAFLSNGLASQLMHQGSHWAAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVS CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH FLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPAGEPSAGASHASADGSPEPAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH AAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLL HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEE HIGDTWAAFAQRWIRRIVLVIGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILI EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVVMALWFVWALDVHNGYHVLIA HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE LGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTH HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH QGNLMRAARLRTLLPMLRTLLFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCCH KLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRTVRLRASDGSLHTVPFSSVST HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEEEEEECCCCEEECCCCCHHH VNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD CCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRR CCEEEECCCEEECCCCCCCCHHHHCCCEEEEEHHCCCEEECCCCEEEECCCCCCCCCCCC GEAGDGPHDGRPEARSGPPPAGGADASSAREQAGKPSAAAPDAPPPSKS CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASS CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCC PTAFLSNGLASQLMHQGSHWAAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVS CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH FLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPAGEPSAGASHASADGSPEPAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH AAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLL HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEE HIGDTWAAFAQRWIRRIVLVIGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILI EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVVMALWFVWALDVHNGYHVLIA HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE LGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTH HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH QGNLMRAARLRTLLPMLRTLLFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCCH KLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRTVRLRASDGSLHTVPFSSVST HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEEEEEECCCCEEECCCCCHHH VNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD CCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRR CCEEEECCCEEECCCCCCCCHHHHCCCEEEEEHHCCCEEECCCCEEEECCCCCCCCCCCC GEAGDGPHDGRPEARSGPPPAGGADASSAREQAGKPSAAAPDAPPPSKS CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]