| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is pdhA [H]
Identifier: 238026701
GI number: 238026701
Start: 1157290
End: 1159962
Strand: Reverse
Name: pdhA [H]
Synonym: bglu_1g10580
Alternate gene names: 238026701
Gene position: 1159962-1157290 (Counterclockwise)
Preceding gene: 238026703
Following gene: 238026700
Centisome position: 29.69
GC content: 67.53
Gene sequence:
>2673_bases ATGAACCAACCGTCCACGCTACCGGACGTTGACCCACAGGAAACCCGCGAGTGGCTGGAGGCAATGCAGGCTGTAGTGGA AGTCGAGGGGCGCCCGCGCGCGCACTACCTGATCGATCAGCTGCTGGACTACGACGTGGGCGCGCACGGCGATCTCTACA CGCGCGTCACGACCCCCTACGTCAACACGATTCCGGCCAGGAACCAGCCGCACTATCCGGGCGACCTGGCCGTCGAGCGG CGCCTGGGTGCCTACATCCGCTGGAACGCGATGGCGATGGTGCTGCGCGCGGGCCGGCATTCGAACGTGGGCGGACACAT CGCGACCTACGCGTCGGCGGCGGTGCTCTACGAAACGGGCTTCAATCACTTTTTCCGCGGCCGCACCGAATCCTTCGACG GCGACCTCGTCTACATCCAGGGCCACTCGGCGCCGGGCATCTACGGCCGCGCCTTCCTCGAAGGCCGCATCAGCGAGGAA CAGCTGGAGAACTTCCGGCGCGAGGCGGGCCGTGACGGCATCTCGTCCTACCCCCACCCGCGGCTGATGCCGAGCTTCTG GCAGTTCCCGACCGTATCGATGGGTCTCGGGCCGCTGACCGCCGCCTATCAGGCGCGCTTCATGCGCTACCTCGAGTATC GCGGCCTCAAGCAGCATCAGGGCCGCAAGGTCTGGGCCTTCCTCGGCGACGGCGAGATGGACCAGCCGGAATCGCTGGCG GCCATCGCGCTGGGCGGGCGCGAAAGCCTCGACAACCTGATCTTCGTCGTGAACTGCAACCTGCAGCGCCTGGACGGCCC GGTGCGCGGCAACAGCAAGGTCATGCAGGAACTGGAAGGCAACTTCCGCGCCGCCGGCTGGAACGTCATCAAGGTGGTGT GGGGCAGCGGCTGGGACCGCCTGCTCGAACAGGACCGCACCGGGCTGCTGCGCCGGCGCATGATGGAGTGCGTCGACGGC GATTATCAGACCTTCAAGTCGCAGAACGGCGCCTATGTGCGCGAGCACTTCTTCGGCAAGTATCCCGAGTTGCTGGAGAT GGTGGCCCACCTGTCCGACGACGAGATCTGGGCGCTTTCGCGCGGCGGCCATGATCCGGAGAAGGTCTATGCCGCCTACG AGCGCGCGGTGAACCACAAGGGCCAGCCGACCGTGATCCTGGCCAAGACGGTCAAGGGCTTCGGGATGGGCGAGGCCGGC GAAGGCCAGAACATCAACCATCAGTTGAAGAAGATGAGCGCGGACGCCGTGCGCGCGTTCCGCGACCGCTTCGCGCTGCC GCTCAGCGACGAGCAGCTCGCCGAGATGGCCTACCTGAAGCCGGAGCCGGACAGCGAGGAGGCGCGCTACCTGGCGCAGC GCCGCGCGAGCCTGGGCGGCCACGTGCCGGCCCGCTTCAGCGACGTGCCGCGGCTCGAGGTGCCGCCGCTGTCGGCGTTC GCGACCCAGCTGAAGGACAGCGGCGAGCGCGGCGCCTCCACCACCATGGCGTTCGTGCGGATCCTCGCCACGCTGCTGAA GGACCCGAACCTGGGCAAGCTGGTGGTGCCGATCGTGCCCGACGAGTCGCGCACCTTCGGCATGGAAGGCATGTTCCGCC AGATCGGCATCCACTCCTACCTGGGCCAGCTCTACACGCCGCAGGACGCCGGCCAGCTCAGCTACTACAAGGAAGCCAAG GACGGCCAGATCCTGCAGGAAGGCATCAACGAATCGGGGGCGATCTCGTCATGGATCGCGGCCGGCACGTCCTACAGCAC GCACGGCCTGACCACCATCCCGTTCTACATCTTCTATTCGATGTTCGGGCTGCAGCGCGTGGGCGACCTCGCCTGGGCGG CCGGCGACGCACGCACGCGCGGCTTCCTGCTGGGCGCCACCTCGGGCCGCACCACGCTGATGGGCGAAGGGCTGCAGCAC GACGACGGCCACAGCCACGTGCTCTCGTCGGTGATCCCCTGCTGCGTGTCGTATGACCCGACCTTCTCCTACGAGCTCGC GGTGATCATCCAGGACGGTCTGCGGCGCATGTACCAGGAGCAGGAAGACATCTTCTACTACATCACGCTGCTCAACGAGA ACTACCCGCACCCGGCGCTGCCGGAAGGCGCCGAGGCCGGCATCCTGAAGGGCCTCTACCTGTTCAGCGAGGGCGCCGCC GGCGGCGCCGACGCGCCGCGCGTGCAACTGATGGGCAGCGGCTCGATCCTGCGCGAGGTGATCGCGGCCGCGGAACTGCT CAAGCAGGACTTCTCGATCGACAGCGACGTCTGGAGCGCCACCAGCCTCACCGAGCTGCGCCGCGAAGGGCTGCAGGCCG AACGCTGGAACCTGCTGCATCCGGACCACGAGCAGCGCGTCCCCTATGTGCAGCAGTGCCTGCGCGGCCATGCCGGCCCG CTCGTGGTGGCGACCGATTACATGAAGATCGTCGGCGACCAGATCCGCCCGTATGTGACGGACCGCCGGCTCGTCTCGCT CGGCACCGACGGCTTCGGCCGCTCGGACACGCGCGAATCGCTGCGCACCTTCTTCGAGGTCGATCGCCACTTCATCGTGC TGGCCGCGCTGAAGGCGCTGGCCGACGACGGCAAGATCGCCCGCGCACGCGTTGGCGAGGCGATCAAGCGCTACGGCATC GACACCGAGAAGCTCGACCCCACCACGGTCTGA
Upstream 100 bases:
>100_bases GGACGAGACGACCCCTCTCGCGTTGCGCGCAGTCCTTGCGGCTTGCCGTTGCCGTCTGGCCGGGCGGCCCGCCGGCCATC TATTTCTATGGAGCTATGTC
Downstream 100 bases:
>100_bases TCGCAGGCTTCACCGCGGCCGCGCCCGAGCAGGGCCGGCCGCAGGCAGGACGCACGGCGCGGCCGGCATGCACGGCCGCC TCGGTAGTGAAAAGCCGGCT
Product: 2-oxoacid dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MNQPSTLPDVDPQETREWLEAMQAVVEVEGRPRAHYLIDQLLDYDVGAHGDLYTRVTTPYVNTIPARNQPHYPGDLAVER RLGAYIRWNAMAMVLRAGRHSNVGGHIATYASAAVLYETGFNHFFRGRTESFDGDLVYIQGHSAPGIYGRAFLEGRISEE QLENFRREAGRDGISSYPHPRLMPSFWQFPTVSMGLGPLTAAYQARFMRYLEYRGLKQHQGRKVWAFLGDGEMDQPESLA AIALGGRESLDNLIFVVNCNLQRLDGPVRGNSKVMQELEGNFRAAGWNVIKVVWGSGWDRLLEQDRTGLLRRRMMECVDG DYQTFKSQNGAYVREHFFGKYPELLEMVAHLSDDEIWALSRGGHDPEKVYAAYERAVNHKGQPTVILAKTVKGFGMGEAG EGQNINHQLKKMSADAVRAFRDRFALPLSDEQLAEMAYLKPEPDSEEARYLAQRRASLGGHVPARFSDVPRLEVPPLSAF ATQLKDSGERGASTTMAFVRILATLLKDPNLGKLVVPIVPDESRTFGMEGMFRQIGIHSYLGQLYTPQDAGQLSYYKEAK DGQILQEGINESGAISSWIAAGTSYSTHGLTTIPFYIFYSMFGLQRVGDLAWAAGDARTRGFLLGATSGRTTLMGEGLQH DDGHSHVLSSVIPCCVSYDPTFSYELAVIIQDGLRRMYQEQEDIFYYITLLNENYPHPALPEGAEAGILKGLYLFSEGAA GGADAPRVQLMGSGSILREVIAAAELLKQDFSIDSDVWSATSLTELRREGLQAERWNLLHPDHEQRVPYVQQCLRGHAGP LVVATDYMKIVGDQIRPYVTDRRLVSLGTDGFGRSDTRESLRTFFEVDRHFIVLAALKALADDGKIARARVGEAIKRYGI DTEKLDPTTV
Sequences:
>Translated_890_residues MNQPSTLPDVDPQETREWLEAMQAVVEVEGRPRAHYLIDQLLDYDVGAHGDLYTRVTTPYVNTIPARNQPHYPGDLAVER RLGAYIRWNAMAMVLRAGRHSNVGGHIATYASAAVLYETGFNHFFRGRTESFDGDLVYIQGHSAPGIYGRAFLEGRISEE QLENFRREAGRDGISSYPHPRLMPSFWQFPTVSMGLGPLTAAYQARFMRYLEYRGLKQHQGRKVWAFLGDGEMDQPESLA AIALGGRESLDNLIFVVNCNLQRLDGPVRGNSKVMQELEGNFRAAGWNVIKVVWGSGWDRLLEQDRTGLLRRRMMECVDG DYQTFKSQNGAYVREHFFGKYPELLEMVAHLSDDEIWALSRGGHDPEKVYAAYERAVNHKGQPTVILAKTVKGFGMGEAG EGQNINHQLKKMSADAVRAFRDRFALPLSDEQLAEMAYLKPEPDSEEARYLAQRRASLGGHVPARFSDVPRLEVPPLSAF ATQLKDSGERGASTTMAFVRILATLLKDPNLGKLVVPIVPDESRTFGMEGMFRQIGIHSYLGQLYTPQDAGQLSYYKEAK DGQILQEGINESGAISSWIAAGTSYSTHGLTTIPFYIFYSMFGLQRVGDLAWAAGDARTRGFLLGATSGRTTLMGEGLQH DDGHSHVLSSVIPCCVSYDPTFSYELAVIIQDGLRRMYQEQEDIFYYITLLNENYPHPALPEGAEAGILKGLYLFSEGAA GGADAPRVQLMGSGSILREVIAAAELLKQDFSIDSDVWSATSLTELRREGLQAERWNLLHPDHEQRVPYVQQCLRGHAGP LVVATDYMKIVGDQIRPYVTDRRLVSLGTDGFGRSDTRESLRTFFEVDRHFIVLAALKALADDGKIARARVGEAIKRYGI DTEKLDPTTV >Mature_890_residues MNQPSTLPDVDPQETREWLEAMQAVVEVEGRPRAHYLIDQLLDYDVGAHGDLYTRVTTPYVNTIPARNQPHYPGDLAVER RLGAYIRWNAMAMVLRAGRHSNVGGHIATYASAAVLYETGFNHFFRGRTESFDGDLVYIQGHSAPGIYGRAFLEGRISEE QLENFRREAGRDGISSYPHPRLMPSFWQFPTVSMGLGPLTAAYQARFMRYLEYRGLKQHQGRKVWAFLGDGEMDQPESLA AIALGGRESLDNLIFVVNCNLQRLDGPVRGNSKVMQELEGNFRAAGWNVIKVVWGSGWDRLLEQDRTGLLRRRMMECVDG DYQTFKSQNGAYVREHFFGKYPELLEMVAHLSDDEIWALSRGGHDPEKVYAAYERAVNHKGQPTVILAKTVKGFGMGEAG EGQNINHQLKKMSADAVRAFRDRFALPLSDEQLAEMAYLKPEPDSEEARYLAQRRASLGGHVPARFSDVPRLEVPPLSAF ATQLKDSGERGASTTMAFVRILATLLKDPNLGKLVVPIVPDESRTFGMEGMFRQIGIHSYLGQLYTPQDAGQLSYYKEAK DGQILQEGINESGAISSWIAAGTSYSTHGLTTIPFYIFYSMFGLQRVGDLAWAAGDARTRGFLLGATSGRTTLMGEGLQH DDGHSHVLSSVIPCCVSYDPTFSYELAVIIQDGLRRMYQEQEDIFYYITLLNENYPHPALPEGAEAGILKGLYLFSEGAA GGADAPRVQLMGSGSILREVIAAAELLKQDFSIDSDVWSATSLTELRREGLQAERWNLLHPDHEQRVPYVQQCLRGHAGP LVVATDYMKIVGDQIRPYVTDRRLVSLGTDGFGRSDTRESLRTFFEVDRHFIVLAALKALADDGKIARARVGEAIKRYGI DTEKLDPTTV
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=885, Percent_Identity=57.5141242937853, Blast_Score=1051, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 99258; Mature: 99258
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPSTLPDVDPQETREWLEAMQAVVEVEGRPRAHYLIDQLLDYDVGAHGDLYTRVTTPY CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCC VNTIPARNQPHYPGDLAVERRLGAYIRWNAMAMVLRAGRHSNVGGHIATYASAAVLYETG CCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC FNHFFRGRTESFDGDLVYIQGHSAPGIYGRAFLEGRISEEQLENFRREAGRDGISSYPHP CHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC RLMPSFWQFPTVSMGLGPLTAAYQARFMRYLEYRGLKQHQGRKVWAFLGDGEMDQPESLA CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCCCEE AIALGGRESLDNLIFVVNCNLQRLDGPVRGNSKVMQELEGNFRAAGWNVIKVVWGSGWDR EEEECCHHCCCCEEEEEECCHHHCCCCCCCCHHHHHHHCCCCEECCCEEEEEEECCCHHH LLEQDRTGLLRRRMMECVDGDYQTFKSQNGAYVREHFFGKYPELLEMVAHLSDDEIWALS HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCEEEEC RGGHDPEKVYAAYERAVNHKGQPTVILAKTVKGFGMGEAGEGQNINHQLKKMSADAVRAF CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RDRFALPLSDEQLAEMAYLKPEPDSEEARYLAQRRASLGGHVPARFSDVPRLEVPPLSAF HHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH ATQLKDSGERGASTTMAFVRILATLLKDPNLGKLVVPIVPDESRTFGMEGMFRQIGIHSY HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH LGQLYTPQDAGQLSYYKEAKDGQILQEGINESGAISSWIAAGTSYSTHGLTTIPFYIFYS HHCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH MFGLQRVGDLAWAAGDARTRGFLLGATSGRTTLMGEGLQHDDGHSHVLSSVIPCCVSYDP HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCC TFSYELAVIIQDGLRRMYQEQEDIFYYITLLNENYPHPALPEGAEAGILKGLYLFSEGAA CCCEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHEECCCC GGADAPRVQLMGSGSILREVIAAAELLKQDFSIDSDVWSATSLTELRREGLQAERWNLLH CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC PDHEQRVPYVQQCLRGHAGPLVVATDYMKIVGDQIRPYVTDRRLVSLGTDGFGRSDTRES CCHHCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCHHCCCEEEEECCCCCCCCHHHHH LRTFFEVDRHFIVLAALKALADDGKIARARVGEAIKRYGIDTEKLDPTTV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNQPSTLPDVDPQETREWLEAMQAVVEVEGRPRAHYLIDQLLDYDVGAHGDLYTRVTTPY CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCC VNTIPARNQPHYPGDLAVERRLGAYIRWNAMAMVLRAGRHSNVGGHIATYASAAVLYETG CCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC FNHFFRGRTESFDGDLVYIQGHSAPGIYGRAFLEGRISEEQLENFRREAGRDGISSYPHP CHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC RLMPSFWQFPTVSMGLGPLTAAYQARFMRYLEYRGLKQHQGRKVWAFLGDGEMDQPESLA CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCCCEE AIALGGRESLDNLIFVVNCNLQRLDGPVRGNSKVMQELEGNFRAAGWNVIKVVWGSGWDR EEEECCHHCCCCEEEEEECCHHHCCCCCCCCHHHHHHHCCCCEECCCEEEEEEECCCHHH LLEQDRTGLLRRRMMECVDGDYQTFKSQNGAYVREHFFGKYPELLEMVAHLSDDEIWALS HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCEEEEC RGGHDPEKVYAAYERAVNHKGQPTVILAKTVKGFGMGEAGEGQNINHQLKKMSADAVRAF CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RDRFALPLSDEQLAEMAYLKPEPDSEEARYLAQRRASLGGHVPARFSDVPRLEVPPLSAF HHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH ATQLKDSGERGASTTMAFVRILATLLKDPNLGKLVVPIVPDESRTFGMEGMFRQIGIHSY HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH LGQLYTPQDAGQLSYYKEAKDGQILQEGINESGAISSWIAAGTSYSTHGLTTIPFYIFYS HHCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH MFGLQRVGDLAWAAGDARTRGFLLGATSGRTTLMGEGLQHDDGHSHVLSSVIPCCVSYDP HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCC TFSYELAVIIQDGLRRMYQEQEDIFYYITLLNENYPHPALPEGAEAGILKGLYLFSEGAA CCCEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHEECCCC GGADAPRVQLMGSGSILREVIAAAELLKQDFSIDSDVWSATSLTELRREGLQAERWNLLH CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC PDHEQRVPYVQQCLRGHAGPLVVATDYMKIVGDQIRPYVTDRRLVSLGTDGFGRSDTRES CCHHCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCHHCCCEEEEECCCCCCCCHHHHH LRTFFEVDRHFIVLAALKALADDGKIARARVGEAIKRYGIDTEKLDPTTV HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]