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The map label for this gene is yocS [H]

Identifier: 238026698

GI number: 238026698

Start: 1152484

End: 1153410

Strand: Reverse

Name: yocS [H]

Synonym: bglu_1g10550

Alternate gene names: 238026698

Gene position: 1153410-1152484 (Counterclockwise)

Preceding gene: 238026699

Following gene: 238026696

Centisome position: 29.53

GC content: 69.58

Gene sequence:

>927_bases
ATGCTTGCCCGGGTTACCCGACTCTTTCCGCTGTGGGCCGTGCTGGTCTCGCTCGCCGCGTATGTCTCGCCGGCCACCTT
CTCGCCGGTCGCGCCGCACGTCACCGCGCTGCTCACGCTGATCATGCTGTCGATGGGCGTCACGCTGTCGGTCGCCGATT
TCCGCCGCGTCTTCACGCGCCCCGCGCCCGTGCTCGCCGGCATCGTGCTGCATTACCTCGTGATGCCGCTCGCCGCCTGG
GCGCTCGCCAAGCTGCTGCGGATGCCGCCCGAGCTGACCGCCGGCATGGTGCTGGTCGGCAGCGTCGCAAGCGGCACCGC
GTCGAACGTGATGATCTATCTGGCGCGCGGCGACGTCGCGCTGTCGGTGACGATCAGCGCGCTGTCGACGCTGGTCGGCG
TGTTCGCCACGCCGCTGCTCACGCGCCTGTACGTCGACGCCTCGATTGCCGTCGACGTCCACGGCATGCTGATGAGCATC
GTGCAGATCGTCGCGCTGCCGATCGTGGTCGGCTTGGCCGTCAACCATCTGTTGCGCCGCGCGGTCGAGGCGATCGAGCC
GTATCTGCCGCTCGTGTCGATGCTCGCGATCCTGCTGATCATCGCCGCCGTGGTGGCCGGCACGCGCAACAGCATCGCGT
CGGTGGGGCTCGTGGTGATGGTGGGCGTGATGCTGCACAACGCTATCGGGCTGCTCGGCGGCTACTGGGGCGGGCGCCTG
CTCGGCTTCGACGAAGCCGTGTGCCGCACGCTTGCGATCGAGGTGGGCATGCAGAATTCCGGGCTCGCCGCCACGCTCGG
CAAGCTGTATTTCACGCCGATCGCGGCGCTGCCGGGCGCGCTGTTCTCGGTCTGGCACAACCTTTCCGGCTCGCTGCTGG
CGGGCTATTGGGCGGGGCGGCCGGCGCCGGGGGCGAGGCGCGAGTGA

Upstream 100 bases:

>100_bases
CCCACCAGGACCGGCGCCGGACGCTCCGGCAGGCGCCCCCCTGCCCGCCCGCGCGGCGCGGCCCGCCACCACACCAACCA
GATCGACCAAGGATTTCACC

Downstream 100 bases:

>100_bases
GCGCGCGGCCGGCGCCTTATTTATGTCGCTCAGCTTGACCTGGCTGCCGCCGTCATCTGCTCTTGGGCACCGCCACGCCG
GCAATGATTGGATCGGTCCA

Product: Na+ bile acid symporter, BASS family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLARVTRLFPLWAVLVSLAAYVSPATFSPVAPHVTALLTLIMLSMGVTLSVADFRRVFTRPAPVLAGIVLHYLVMPLAAW
ALAKLLRMPPELTAGMVLVGSVASGTASNVMIYLARGDVALSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSI
VQIVALPIVVGLAVNHLLRRAVEAIEPYLPLVSMLAILLIIAAVVAGTRNSIASVGLVVMVGVMLHNAIGLLGGYWGGRL
LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGRPAPGARRE

Sequences:

>Translated_308_residues
MLARVTRLFPLWAVLVSLAAYVSPATFSPVAPHVTALLTLIMLSMGVTLSVADFRRVFTRPAPVLAGIVLHYLVMPLAAW
ALAKLLRMPPELTAGMVLVGSVASGTASNVMIYLARGDVALSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSI
VQIVALPIVVGLAVNHLLRRAVEAIEPYLPLVSMLAILLIIAAVVAGTRNSIASVGLVVMVGVMLHNAIGLLGGYWGGRL
LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGRPAPGARRE
>Mature_308_residues
MLARVTRLFPLWAVLVSLAAYVSPATFSPVAPHVTALLTLIMLSMGVTLSVADFRRVFTRPAPVLAGIVLHYLVMPLAAW
ALAKLLRMPPELTAGMVLVGSVASGTASNVMIYLARGDVALSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSI
VQIVALPIVVGLAVNHLLRRAVEAIEPYLPLVSMLAILLIIAAVVAGTRNSIASVGLVVMVGVMLHNAIGLLGGYWGGRL
LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGRPAPGARRE

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=247, Percent_Identity=31.9838056680162, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI4506971, Length=251, Percent_Identity=27.0916334661355, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI215422370, Length=232, Percent_Identity=29.3103448275862, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI9790143, Length=232, Percent_Identity=29.3103448275862, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI215422368, Length=232, Percent_Identity=29.3103448275862, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI58219066, Length=234, Percent_Identity=24.7863247863248, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI37537552, Length=243, Percent_Identity=22.6337448559671, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32278; Mature: 32278

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARVTRLFPLWAVLVSLAAYVSPATFSPVAPHVTALLTLIMLSMGVTLSVADFRRVFTR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHCC
PAPVLAGIVLHYLVMPLAAWALAKLLRMPPELTAGMVLVGSVASGTASNVMIYLARGDVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCEEEEEEECCEE
LSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSIVQIVALPIVVGLAVNHLLRR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVEAIEPYLPLVSMLAILLIIAAVVAGTRNSIASVGLVVMVGVMLHNAIGLLGGYWGGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGR
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
PAPGARRE
CCCCCCCC
>Mature Secondary Structure
MLARVTRLFPLWAVLVSLAAYVSPATFSPVAPHVTALLTLIMLSMGVTLSVADFRRVFTR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHCC
PAPVLAGIVLHYLVMPLAAWALAKLLRMPPELTAGMVLVGSVASGTASNVMIYLARGDVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCEEEEEEECCEE
LSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSIVQIVALPIVVGLAVNHLLRR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVEAIEPYLPLVSMLAILLIIAAVVAGTRNSIASVGLVVMVGVMLHNAIGLLGGYWGGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGR
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
PAPGARRE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]