Click here to switch to the map view.

The map label for this gene is ytsP [H]

Identifier: 238026630

GI number: 238026630

Start: 1055970

End: 1056473

Strand: Reverse

Name: ytsP [H]

Synonym: bglu_1g09820

Alternate gene names: 238026630

Gene position: 1056473-1055970 (Counterclockwise)

Preceding gene: 238026631

Following gene: 238026629

Centisome position: 27.04

GC content: 66.87

Gene sequence:

>504_bases
ATGTTCGAACTCTCCACCTCGCAGTCCACCTCGAAGCCCGAGCTCTATGCCACGCTCGTCGAGCAAGCACGCTCGCTGCT
CGAATCGGAAACGGATCTCGTCGCGAACGCGGCGAACTTCTCGTCGCTCGTCTATCACTCGCTCGACGGCCTGAACTGGG
CCGGTTTCTACTTTTACGACGGCGCCGAGCTCGTGGTCGGGCCATTCCAGGGCAAGCCCGCCTGCGTGCGGATTCCGCTC
GGCAGGGGGGTGTGCGGCACGGCAGCGCAAACGCGCGAGACGCAGGTGGTGCGCGATGTGGACGAATTCGCGGGCCACAT
CGCCTGCGATTCGGCTTCGCGATCGGAAATCGTCGTGCCGCTGGTGGCCGGCGACGGCACCTTGATCGGCGTGTGGGATG
TGGACAGTCCGCAGCTCGCCCGCTTCGACACGGCGGATCGGGAGGGCATGGAAGCGCTGTGCCGCGTGTTCGTCGCGTCC
CGGGAGCGGCGCGGCCGGGCTTGA

Upstream 100 bases:

>100_bases
CCGCAACAGGTGCCCGCGCAAAGCACGGCGATTTCTTTTAGACTGCGCGAATTCCGTGCGGCTCCGGCCGCACGCCCCGA
AATCTCCGCCCCTTTGCGCC

Downstream 100 bases:

>100_bases
GCTTGAGCGAGGGCGGTGCGGCCCTTCACGTGCGTCGCCGGCCCATCCGCGCGGCGAGGTGCCGGATGGTGAACCCGGCG
CCTCGGCAGGCACCGCCGCC

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MFELSTSQSTSKPELYATLVEQARSLLESETDLVANAANFSSLVYHSLDGLNWAGFYFYDGAELVVGPFQGKPACVRIPL
GRGVCGTAAQTRETQVVRDVDEFAGHIACDSASRSEIVVPLVAGDGTLIGVWDVDSPQLARFDTADREGMEALCRVFVAS
RERRGRA

Sequences:

>Translated_167_residues
MFELSTSQSTSKPELYATLVEQARSLLESETDLVANAANFSSLVYHSLDGLNWAGFYFYDGAELVVGPFQGKPACVRIPL
GRGVCGTAAQTRETQVVRDVDEFAGHIACDSASRSEIVVPLVAGDGTLIGVWDVDSPQLARFDTADREGMEALCRVFVAS
RERRGRA
>Mature_167_residues
MFELSTSQSTSKPELYATLVEQARSLLESETDLVANAANFSSLVYHSLDGLNWAGFYFYDGAELVVGPFQGKPACVRIPL
GRGVCGTAAQTRETQVVRDVDEFAGHIACDSASRSEIVVPLVAGDGTLIGVWDVDSPQLARFDTADREGMEALCRVFVAS
RERRGRA

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=143, Percent_Identity=51.0489510489511, Blast_Score=148, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6322781, Length=165, Percent_Identity=42.4242424242424, Blast_Score=144, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 18079; Mature: 18079

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELSTSQSTSKPELYATLVEQARSLLESETDLVANAANFSSLVYHSLDGLNWAGFYFYD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHCCCCCEEEEEEEC
GAELVVGPFQGKPACVRIPLGRGVCGTAAQTRETQVVRDVDEFAGHIACDSASRSEIVVP
CCEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCEEEEE
LVAGDGTLIGVWDVDSPQLARFDTADREGMEALCRVFVASRERRGRA
EEECCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFELSTSQSTSKPELYATLVEQARSLLESETDLVANAANFSSLVYHSLDGLNWAGFYFYD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHCCCCCEEEEEEEC
GAELVVGPFQGKPACVRIPLGRGVCGTAAQTRETQVVRDVDEFAGHIACDSASRSEIVVP
CCEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCEEEEE
LVAGDGTLIGVWDVDSPQLARFDTADREGMEALCRVFVASRERRGRA
EEECCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]