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The map label for this gene is yhcS [C]

Identifier: 238026631

GI number: 238026631

Start: 1056623

End: 1057528

Strand: Reverse

Name: yhcS [C]

Synonym: bglu_1g09830

Alternate gene names: 238026631

Gene position: 1057528-1056623 (Counterclockwise)

Preceding gene: 238026634

Following gene: 238026630

Centisome position: 27.07

GC content: 72.3

Gene sequence:

>906_bases
ATGCGAGATCTGAACGATCTGTATTTCTTCGTGCAAGTCGTGGACCATGGCGGCTTCGCGCCGGCCGGACGCGCGCTGAA
TCTGCCGAAATCGCGGCTGAGCCGGCGCGTCGCCGGGCTCGAGGAGCGCCTCGGGATGCGGCTGATCCAGCGTTCGACGC
GACGCTTCACGCTCACCGAGGTCGGCGCGACCTATTACGCCCACTGCCGCGCGATGCTCGTCGAGGCCGACGCGGCCGAC
GAGGCGGTTGCGCTGCGCCATGCGGAACCGCGCGGGATCGTGCGCGTGACCTGCCCGATCGCGCTGCTCGATTCGCTGGT
GGGCGAGATGCTCGGCGCGTTCATGGCGCAATGTCCGCAGGTCGAGATTCATCTGGAGGAAACCAACCGGCGCGTCGACG
TGGTCGGCGAAGGCGTCGACATCGCGCTGCGCGTGCGGCCGCCGCCGCTCGAGGACAGCGATCTCGTGCTGCGCCCGCTC
GCCGAGCGCGGCCAGTGCCTCGTGGCAAGCCCGGCGCTGCTCGCGCGCGTGACGCCGCCGCGCGTGCCGGCCGATCTCGC
CGCGCTGCCGAGCCTCGCGCTAGGCCAGCCGCAGGACGATCACGTCTGGAACCTGCGCGGCCCCCACGGCGCGCACGCAA
CCGTCCCGCACCGGCCGCGCTTCGTCACGCGCGCCATGTTCGCGCTGCGCGCGGCGGCCGTGGCAGGCGTCGGCGTCGTG
CAACTGCCGACCATGATGATCCGCGACGCCGTCGCGCGCAGCGAGTTGCAGGTCGTGCTGCCCGACTGGGCGCCGCGCCG
CGAGATGGTCCACGCGGTGCTCGCCTCCCGGCGCGGCCTGCTGCCGGCCGTGCGCGCGCTGCTCGACTTTCTCGTCGAGC
GGTTCGCGGCGCTCGAACCCGATTGA

Upstream 100 bases:

>100_bases
CACGGCGATCTGCCCGGACGATAGGAAGCAGCATAAGATCGGAACGATAGACGCGGTAGTATGCGAAAATCGCACTCAGC
GTTCTATCTGGTGAACGATG

Downstream 100 bases:

>100_bases
ATCCTGTCGAGCCCGATCGCCTCGCCGCCCGCTTCGTCGTCATTCGTCGCCGCAACAGGTGCCCGCGCAAAGCACGGCGA
TTTCTTTTAGACTGCGCGAA

Product: LysR family regulatory protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRDLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRVAGLEERLGMRLIQRSTRRFTLTEVGATYYAHCRAMLVEADAAD
EAVALRHAEPRGIVRVTCPIALLDSLVGEMLGAFMAQCPQVEIHLEETNRRVDVVGEGVDIALRVRPPPLEDSDLVLRPL
AERGQCLVASPALLARVTPPRVPADLAALPSLALGQPQDDHVWNLRGPHGAHATVPHRPRFVTRAMFALRAAAVAGVGVV
QLPTMMIRDAVARSELQVVLPDWAPRREMVHAVLASRRGLLPAVRALLDFLVERFAALEPD

Sequences:

>Translated_301_residues
MRDLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRVAGLEERLGMRLIQRSTRRFTLTEVGATYYAHCRAMLVEADAAD
EAVALRHAEPRGIVRVTCPIALLDSLVGEMLGAFMAQCPQVEIHLEETNRRVDVVGEGVDIALRVRPPPLEDSDLVLRPL
AERGQCLVASPALLARVTPPRVPADLAALPSLALGQPQDDHVWNLRGPHGAHATVPHRPRFVTRAMFALRAAAVAGVGVV
QLPTMMIRDAVARSELQVVLPDWAPRREMVHAVLASRRGLLPAVRALLDFLVERFAALEPD
>Mature_301_residues
MRDLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRVAGLEERLGMRLIQRSTRRFTLTEVGATYYAHCRAMLVEADAAD
EAVALRHAEPRGIVRVTCPIALLDSLVGEMLGAFMAQCPQVEIHLEETNRRVDVVGEGVDIALRVRPPPLEDSDLVLRPL
AERGQCLVASPALLARVTPPRVPADLAALPSLALGQPQDDHVWNLRGPHGAHATVPHRPRFVTRAMFALRAAAVAGVGVV
QLPTMMIRDAVARSELQVVLPDWAPRREMVHAVLASRRGLLPAVRALLDFLVERFAALEPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=28.135593220339, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=29.0657439446367, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=30.794701986755, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=27.906976744186, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=25, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789440, Length=262, Percent_Identity=23.2824427480916, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=26.2798634812287, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787601, Length=210, Percent_Identity=25.2380952380952, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=23.9057239057239, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=124, Percent_Identity=28.2258064516129, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33005; Mature: 33005

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRVAGLEERLGMRLIQRSTRRFTLTE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHH
VGATYYAHCRAMLVEADAADEAVALRHAEPRGIVRVTCPIALLDSLVGEMLGAFMAQCPQ
HHHHHHHHHHHHEEECCCCCHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC
VEIHLEETNRRVDVVGEGVDIALRVRPPPLEDSDLVLRPLAERGQCLVASPALLARVTPP
EEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHCCCEEEECCHHHHCCCCC
RVPADLAALPSLALGQPQDDHVWNLRGPHGAHATVPHRPRFVTRAMFALRAAAVAGVGVV
CCCHHHHHCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
QLPTMMIRDAVARSELQVVLPDWAPRREMVHAVLASRRGLLPAVRALLDFLVERFAALEP
HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
D
C
>Mature Secondary Structure
MRDLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRVAGLEERLGMRLIQRSTRRFTLTE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHH
VGATYYAHCRAMLVEADAADEAVALRHAEPRGIVRVTCPIALLDSLVGEMLGAFMAQCPQ
HHHHHHHHHHHHEEECCCCCHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC
VEIHLEETNRRVDVVGEGVDIALRVRPPPLEDSDLVLRPLAERGQCLVASPALLARVTPP
EEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHCCCEEEECCHHHHCCCCC
RVPADLAALPSLALGQPQDDHVWNLRGPHGAHATVPHRPRFVTRAMFALRAAAVAGVGVV
CCCHHHHHCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
QLPTMMIRDAVARSELQVVLPDWAPRREMVHAVLASRRGLLPAVRALLDFLVERFAALEP
HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]