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The map label for this gene is ompA [H]

Identifier: 238026527

GI number: 238026527

Start: 947780

End: 948436

Strand: Reverse

Name: ompA [H]

Synonym: bglu_1g08710

Alternate gene names: 238026527

Gene position: 948436-947780 (Counterclockwise)

Preceding gene: 238026528

Following gene: 238026526

Centisome position: 24.28

GC content: 62.4

Gene sequence:

>657_bases
ATGAATAAATTTTCAAAGCTCGCGTTCATTGCAGCTACCGCAGTTGTGGCTGCATCCGCCTCGGCTCAGTCGGTGCCGGC
ATCGCGACAAGCCGTGAATGACAACTGGGTGAATGGCACGGGCGAATACGTGTGGATGAACGGCACGAACGAGCTTTGCT
GGCGCGATGCGTTCTGGACGCCGGCAACGGCAAACGCGAAGTGCGACGGCGCGCTGGTCGCGCAGGCACCGGCGCCGACG
CCGGTCGCTCCGGTCGCTCCGCCGCCGATCACGAGCCAGAAGATCACGTATCAGGCTGACGCGCTGTTCGACTTCGACAA
GGCGACGCTCAAGCCGCTGGGCAAGCAGAAGCTGGACGAGCTGGCCGCCAAGATCCAGGGCATGAACGTGGAAGTCGTGG
TCGCTACCGGCTACACCGACCGCATCGGCTCGGACAAGTACAACGACCGTCTGTCGCTGCGCCGTGCGCAAGCCGTCAAG
TCGTACCTGGTCAGCAAGGGCGTCGAGTCGAGCAAGGTCTACACGGAAGGCAAGGGCAAGCGCAATCCGGTCACGACGGG
CTGCAACCAGAAGAACCGCAAGCAACTCATCGCCTGCCTCGCGCCGGATCGTCGCGTGGAAGTGGAAGTGGTTGGCACGC
AGCAAGTGCAGAAGTAA

Upstream 100 bases:

>100_bases
TTTGTGCCGCACCAATGTTATACTCCGAGCAATGTATGACTTGTCATCGTCATCAAGCTCGCAGTAAACCTGCGGTAATC
TCAATTTCGAGAGGAGAAAT

Downstream 100 bases:

>100_bases
AAGGGCCGGCAGTAACCTCACGGGTTACTACCGCCTTGAAGCCCCGCCTCGGCGGGGCTTTTTCTTTTCGGCGCCGGCCA
TCCGGTGGCAGCCGATCCCG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNKFSKLAFIAATAVVAASASAQSVPASRQAVNDNWVNGTGEYVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPAPT
PVAPVAPPPITSQKITYQADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVK
SYLVSKGVESSKVYTEGKGKRNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQQVQK

Sequences:

>Translated_218_residues
MNKFSKLAFIAATAVVAASASAQSVPASRQAVNDNWVNGTGEYVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPAPT
PVAPVAPPPITSQKITYQADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVK
SYLVSKGVESSKVYTEGKGKRNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQQVQK
>Mature_218_residues
MNKFSKLAFIAATAVVAASASAQSVPASRQAVNDNWVNGTGEYVWMNGTNELCWRDAFWTPATANAKCDGALVAQAPAPT
PVAPVAPPPITSQKITYQADALFDFDKATLKPLGKQKLDELAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVK
SYLVSKGVESSKVYTEGKGKRNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQQVQK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=131, Percent_Identity=50.381679389313, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI48994946, Length=108, Percent_Identity=35.1851851851852, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23518; Mature: 23518

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFSKLAFIAATAVVAASASAQSVPASRQAVNDNWVNGTGEYVWMNGTNELCWRDAFWT
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAKCDGALVAQAPAPTPVAPVAPPPITSQKITYQADALFDFDKATLKPLGKQKLDE
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEECCHHHHCCCCHHHHHH
LAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVESSKVYTEGKGK
HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
RNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQQVQK
CCCCCCCCCCCCHHHEEEEECCCCEEEEEEECCHHCCC
>Mature Secondary Structure
MNKFSKLAFIAATAVVAASASAQSVPASRQAVNDNWVNGTGEYVWMNGTNELCWRDAFWT
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEECCCCC
PATANAKCDGALVAQAPAPTPVAPVAPPPITSQKITYQADALFDFDKATLKPLGKQKLDE
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEECCHHHHCCCCHHHHHH
LAAKIQGMNVEVVVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVESSKVYTEGKGK
HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
RNPVTTGCNQKNRKQLIACLAPDRRVEVEVVGTQQVQK
CCCCCCCCCCCCHHHEEEEECCCCEEEEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]