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The map label for this gene is rarA [H]

Identifier: 238026471

GI number: 238026471

Start: 880093

End: 881403

Strand: Direct

Name: rarA [H]

Synonym: bglu_1g08150

Alternate gene names: 238026471

Gene position: 880093-881403 (Clockwise)

Preceding gene: 238026470

Following gene: 238026472

Centisome position: 22.53

GC content: 68.5

Gene sequence:

>1311_bases
ATGGCCGACCTGTTTGAAGTCGAACCGCGCCGCCCGCTCGCCGAGGCGCTGCGCCCGAAGACGCTTGCCGAGGTGATCGG
CCAGACGCACCTTCTCGGCGACGGCAAGCCGCTGCGGCTCGCGTTCGAGTCGGGCAAGCCGCATTCGATGATCCTCTGGG
GGCCGCCCGGCGTCGGCAAGACCACGCTCGCGCGGCTCACCGCCCACGCGTTCGACTGCGAGTTCATCGCGATCTCGGCG
GTGCTGGGCGGCGTGAAGGACATCCGCGAATCGATGGAGCAGGCGCGCGAGACGTTGAACCGCAGTGGGCGCCACACCAT
CCTGTTCGTCGACGAGATCCATCGCTTCAACAAGAGCCAGCAGGACGCGCTGCTGCCGTTCGTCGAATCGGGGCTCGTGA
CCTTCATCGGCGCGACCACCGAGAATCCGAGCTTCGAGGTCAACTCGGCGCTGCTCTCGCGTGCCCAGGTGTACGTGCTG
AAGTCGCTCAGCGACGACGAGATGCGCCAGCTGCTCGCGCGCGCGCAGCAGATCGCGCTCGACGGGCTCGAGTTCGAGCC
GCTTGCCGTCGATACGCTGATCGGCTATGCCGACGGCGACGCGCGGCGTTTCCTGAACCTGCTCGAACAGGCGCAGACGG
CCGCGCTGTCGGCGCGCACCAACCGGATCGATGCCGATTTCGTCGCCAGCGCGATGACGCTGAACGCGCGCCGCTTCGAC
AAGGGCGGCGACAACTTCTACGACCAGATCTCGGCGCTGCACAAGTCGGTGCGCGGCTCGAACCCGGACGCGGCGCTGTA
CTGGTTCTGCCGCATGCTCGACGGCGGCGCCGATCCGAAGTACCTGTCGCGCCGCATCGTGCGGATGGCCTGGGAGGACA
TCGGGCTCGCCGATCCGCGCGCAATGCAGGTGGCCAACGACGCGGCCGAGACCTTCGAGCGGCTCGGCTCGCCGGAAGGC
GAGCTGGCGCTCGGCCAGGCGGTCATCTATCTGGCCTGCGCGGCCAAGAGCAACGCCGGCTACAACGCGTTCAACGCGGC
CATGGCGTTCGTGCGGCAGGACAAGTCGCGCGAGGTGCCGGTGCATCTGCGCAACGCGCCCACCAAGCTGATGAAGGAAC
TCGGCTACGGCCACGCCTACCGCTACGCGCATGACGAGCCGAATGCCTACGCGGCCGGCGAGACGTATTTCCCCGACGGC
ATGCGCGAGCCGCGCTGGTACCAGCCGGTGCCGCGCGGGCTCGAGACCAAGATCGCCGAGAAGCTCGCCTGGCTGCGCGA
GCTCGACCGCGAGGCCGGCAAGCCGGAGTGA

Upstream 100 bases:

>100_bases
ACCCGTCCATCCGGCGGGCGGTGCGCCGTGCGCCCGGCTGTCATAATGTCGGGCTGCGCGGCGATGGACGCCGCGCGGCA
CAAACGTAGGAGTCGAGGCC

Downstream 100 bases:

>100_bases
ACGGTGAACCCCCGGCCGGGGGCCGCGGCCGGCCGAACCCGAAATGAAGCGGCGCGGCCGGCCGGAATCGTCGCGTGCTT
CGCCTCGGGCGGCAGCCGGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MADLFEVEPRRPLAEALRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTAHAFDCEFIAISA
VLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLSDDEMRQLLARAQQIALDGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRIDADFVASAMTLNARRFD
KGGDNFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPRAMQVANDAAETFERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNAAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYFPDG
MREPRWYQPVPRGLETKIAEKLAWLRELDREAGKPE

Sequences:

>Translated_436_residues
MADLFEVEPRRPLAEALRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTAHAFDCEFIAISA
VLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLSDDEMRQLLARAQQIALDGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRIDADFVASAMTLNARRFD
KGGDNFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPRAMQVANDAAETFERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNAAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYFPDG
MREPRWYQPVPRGLETKIAEKLAWLRELDREAGKPE
>Mature_435_residues
ADLFEVEPRRPLAEALRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTAHAFDCEFIAISAV
LGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
SLSDDEMRQLLARAQQIALDGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRIDADFVASAMTLNARRFDK
GGDNFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPRAMQVANDAAETFERLGSPEGE
LALGQAVIYLACAAKSNAGYNAFNAAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYFPDGM
REPRWYQPVPRGLETKIAEKLAWLRELDREAGKPE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=435, Percent_Identity=42.9885057471264, Blast_Score=315, Evalue=5e-86,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=39.0804597701149, Blast_Score=263, Evalue=2e-70,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=56.4102564102564, Blast_Score=466, Evalue=1e-132,
Organism=Escherichia coli, GI1786676, Length=250, Percent_Identity=30.4, Blast_Score=76, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324111, Length=430, Percent_Identity=40.9302325581395, Blast_Score=293, Evalue=3e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=226, Percent_Identity=24.7787610619469, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48372; Mature: 48241

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFEVEPRRPLAEALRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCCHHHHHCHHHHHHHHCCCEECCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTAHAFDCEFIAISAVLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQ
HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLSDDEMRQLLARAQQIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRIDADFVASAMTLNARRFD
CCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQVANDAAETFERLGSPEGELALGQAVIYLACAAKSNAGYNAFNAAMAFVRQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYFPDGMREPRWYQPVPRGLETKIAE
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKPE
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADLFEVEPRRPLAEALRPKTLAEVIGQTHLLGDGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHCHHHHHHHHCCCEECCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTAHAFDCEFIAISAVLGGVKDIRESMEQARETLNRSGRHTILFVDEIHRFNKSQ
HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLSDDEMRQLLARAQQIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNRIDADFVASAMTLNARRFD
CCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPKYLSRRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQVANDAAETFERLGSPEGELALGQAVIYLACAAKSNAGYNAFNAAMAFVRQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYFPDGMREPRWYQPVPRGLETKIAE
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKPE
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]