| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is amiC [H]
Identifier: 238026429
GI number: 238026429
Start: 827697
End: 829004
Strand: Reverse
Name: amiC [H]
Synonym: bglu_1g07640
Alternate gene names: 238026429
Gene position: 829004-827697 (Counterclockwise)
Preceding gene: 238026430
Following gene: 238026428
Centisome position: 21.22
GC content: 65.67
Gene sequence:
>1308_bases ATGAAGCGTCGCAGTCTGTTGAAGGTCGGTTCGATGGCGGGTGCCCTCACGCTCGCGGGGCGCATTCCGCTGGCGCGTGC CGCTCAGGACACGGGCCCGATCAAGGTTGGCATCCTGCATTCGCTGTCGGGCACGATGGCGATCTCCGAGACCTCGCTGA AGGACACCGCGTTGATGACCATCGCGCAGATCAATCAGGCCGGCGGCGTGATGGGGCGCCAGCTCCAGCCGGTGGTGGTC GATCCCGCCTCCAACTGGCCGCTGTTCGCCGAGAAGGCCCGCAGCCTGCTCACCCAGGACAAGGTCGCCGTCGTGTTCGG CTGCTGGACCTCGGTCTCGCGCAAGTCGGTGCTGCCCGTGTTCGAGGAACTCAACGGCCTGCTCTTCTATCCGGTCCAGT ACGAGGGCGAGGAGATGTCGCGCAACGTGTTCTACACCGGCGCCGCACCCAACCAGCAGGCCATCCCCGCCACCGAATAC CTGATGAGCGCCGAAGGCGGCGGCGCCAAGCGCTTCTTCCTGCTCGGCACCGACTACGTCTACCCGCGCACCACCAACAA GATCCTGCGCGCCTTCCTGAAGTCCAAGGGCGTGCAGGACGCCGACATCCAGGAGGTCTACACCCCGTTCGGCCATAGCG ACTACCAGACCATCGTCGCGAACATCCGCACCTTCTCCCAGGGCGGCAAGACCTGCGTGATCTCCACCATCAACGGCGAC TCCAACGTGCCGTTCTACAAGGAACTCGGCAACCAGGGCCTCAAGGCCACCGACGTGCCGGTGGTGGCCTTCTCGGTCGG CGAGGAGGAACTGCGCGGCATCGACACCAAGCCGCTGGTCGGCAACCTCGCCGCCTGGAACTACTTCATGTCGCTGCGCA ACCCCGAGAACACCAAGTTCAAGGCGATGTTCGCCGACTGGGTGAAGAAGAACAACCTGCCCGGCGGCGCCAAGCGCGTC ACCAACGACCCGATGGAGGCCACCTACGTGGGCATCCACATGTGGAAACAGGCCGTGGAGAAGGCCAAAAGCGTCGACGT CGACAAGGTGCGCACGGCCATGGTGGGCCAGAAGTTCGCCGCCCCCTCGGGCTTCGTGCTGGAGATGGACGGCAACCACC ACCTGCACAAGCCGGTCATGATCGGCGAGATCCGCGCCGACGGCCAGTTCAACGTGGTCTGGCGCACCAAGACCACGATC CGCGCCCAGCCGTGGAGCCCTTATATCCCGGGCAACGCCGGCAAGCCCGACGTGGTCAGCTCGATCGGCGAGTTCCTGCG CCGCCGCCGCGCCGCCGCGCTCGCGTAA
Upstream 100 bases:
>100_bases CGCCGGCAACGGCTTTGCCCGCCTCTGGCACATGCCTTGCATTACCCCTGCCCGACAGCGCCGGCCGGCGCACACATGCC AACACGTCAAGGGGAAGTCG
Downstream 100 bases:
>100_bases CTCGCCACGCCGGGACCTGGGGCGCGCAGTCGGCGCCCTGTCCCGCGATGTCCTCGCTCGACGGATCCTGCTCATGACTC TGCGCCCCCTCCTGCGGCTG
Product: urea ABC transporter urea binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MKRRSLLKVGSMAGALTLAGRIPLARAAQDTGPIKVGILHSLSGTMAISETSLKDTALMTIAQINQAGGVMGRQLQPVVV DPASNWPLFAEKARSLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLFYPVQYEGEEMSRNVFYTGAAPNQQAIPATEY LMSAEGGGAKRFFLLGTDYVYPRTTNKILRAFLKSKGVQDADIQEVYTPFGHSDYQTIVANIRTFSQGGKTCVISTINGD SNVPFYKELGNQGLKATDVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFMSLRNPENTKFKAMFADWVKKNNLPGGAKRV TNDPMEATYVGIHMWKQAVEKAKSVDVDKVRTAMVGQKFAAPSGFVLEMDGNHHLHKPVMIGEIRADGQFNVVWRTKTTI RAQPWSPYIPGNAGKPDVVSSIGEFLRRRRAAALA
Sequences:
>Translated_435_residues MKRRSLLKVGSMAGALTLAGRIPLARAAQDTGPIKVGILHSLSGTMAISETSLKDTALMTIAQINQAGGVMGRQLQPVVV DPASNWPLFAEKARSLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLFYPVQYEGEEMSRNVFYTGAAPNQQAIPATEY LMSAEGGGAKRFFLLGTDYVYPRTTNKILRAFLKSKGVQDADIQEVYTPFGHSDYQTIVANIRTFSQGGKTCVISTINGD SNVPFYKELGNQGLKATDVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFMSLRNPENTKFKAMFADWVKKNNLPGGAKRV TNDPMEATYVGIHMWKQAVEKAKSVDVDKVRTAMVGQKFAAPSGFVLEMDGNHHLHKPVMIGEIRADGQFNVVWRTKTTI RAQPWSPYIPGNAGKPDVVSSIGEFLRRRRAAALA >Mature_435_residues MKRRSLLKVGSMAGALTLAGRIPLARAAQDTGPIKVGILHSLSGTMAISETSLKDTALMTIAQINQAGGVMGRQLQPVVV DPASNWPLFAEKARSLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLFYPVQYEGEEMSRNVFYTGAAPNQQAIPATEY LMSAEGGGAKRFFLLGTDYVYPRTTNKILRAFLKSKGVQDADIQEVYTPFGHSDYQTIVANIRTFSQGGKTCVISTINGD SNVPFYKELGNQGLKATDVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFMSLRNPENTKFKAMFADWVKKNNLPGGAKRV TNDPMEATYVGIHMWKQAVEKAKSVDVDKVRTAMVGQKFAAPSGFVLEMDGNHHLHKPVMIGEIRADGQFNVVWRTKTTI RAQPWSPYIPGNAGKPDVVSSIGEFLRRRRAAALA
Specific function: Negatively regulates the expression of the aliphatic amidase operon. AmiC functions by inhibiting the action of AmiR at the protein level. It exhibits protein kinase activity [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000709 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47594; Mature: 47594
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRSLLKVGSMAGALTLAGRIPLARAAQDTGPIKVGILHSLSGTMAISETSLKDTALMT CCCHHHHHHHHHCCCEEEECCCCHHHCCCCCCCEEEEEEECCCCCEEEECCCCCHHHHHH IAQINQAGGVMGRQLQPVVVDPASNWPLFAEKARSLLTQDKVAVVFGCWTSVSRKSVLPV HHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECHHCCCHHHHHH FEELNGLLFYPVQYEGEEMSRNVFYTGAAPNQQAIPATEYLMSAEGGGAKRFFLLGTDYV HHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCEE YPRTTNKILRAFLKSKGVQDADIQEVYTPFGHSDYQTIVANIRTFSQGGKTCVISTINGD CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC SNVPFYKELGNQGLKATDVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFMSLRNPENTKF CCCCHHHHHCCCCCEECCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEE KAMFADWVKKNNLPGGAKRVTNDPMEATYVGIHMWKQAVEKAKSVDVDKVRTAMVGQKFA HHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC APSGFVLEMDGNHHLHKPVMIGEIRADGQFNVVWRTKTTIRAQPWSPYIPGNAGKPDVVS CCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEECEEEEECCCCCCCCCCCCCCHHHH SIGEFLRRRRAAALA HHHHHHHHHHHHHCC >Mature Secondary Structure MKRRSLLKVGSMAGALTLAGRIPLARAAQDTGPIKVGILHSLSGTMAISETSLKDTALMT CCCHHHHHHHHHCCCEEEECCCCHHHCCCCCCCEEEEEEECCCCCEEEECCCCCHHHHHH IAQINQAGGVMGRQLQPVVVDPASNWPLFAEKARSLLTQDKVAVVFGCWTSVSRKSVLPV HHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECHHCCCHHHHHH FEELNGLLFYPVQYEGEEMSRNVFYTGAAPNQQAIPATEYLMSAEGGGAKRFFLLGTDYV HHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCEE YPRTTNKILRAFLKSKGVQDADIQEVYTPFGHSDYQTIVANIRTFSQGGKTCVISTINGD CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC SNVPFYKELGNQGLKATDVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFMSLRNPENTKF CCCCHHHHHCCCCCEECCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEE KAMFADWVKKNNLPGGAKRVTNDPMEATYVGIHMWKQAVEKAKSVDVDKVRTAMVGQKFA HHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC APSGFVLEMDGNHHLHKPVMIGEIRADGQFNVVWRTKTTIRAQPWSPYIPGNAGKPDVVS CCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEEEECEEEEECCCCCCCCCCCCCCHHHH SIGEFLRRRRAAALA HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1907262; 10984043; 1762155; 7813419; 10508151; 10708652 [H]