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The map label for this gene is yhjC [C]

Identifier: 238026375

GI number: 238026375

Start: 765295

End: 766218

Strand: Direct

Name: yhjC [C]

Synonym: bglu_1g07090

Alternate gene names: 238026375

Gene position: 765295-766218 (Clockwise)

Preceding gene: 238026373

Following gene: 238026376

Centisome position: 19.59

GC content: 74.68

Gene sequence:

>924_bases
ATGGACCGTCTCAGCGCGATGGCCAGCTTCGTGGCCGCCATTGAAACCGGCTCGTTCTCGGCGGCTGCCAGGCGGCTCGG
GATCGGCCAGCCGGCCGTGTCGAAGTCGATCGCGAACCTCGAGCGGCAGGTGGGCGTGCCGCTGCTGGCGCGCACCACGC
ACGGACTGATGCCGACCGAGGCCGGCCAGCAGTACTACGAGCGCGCGCGCCGGCTGCTCGACGATGCCGAGGAGGCCGAA
CAGGCGGTGCGCGGCGCGGGCGCCAGCCTGGCCGGCACGCTGCGCGTCGGCGTGCCGGTGGCGTTCGCGCGCCTGCAACT
CGTGCCGGCGCTCGAATCGTTTCTCGACGCCCATCCCGATCTCGTCGTCGAACTGCTGCTCGACGATCGCCATGCCGACC
TCGGCGCCGAACGCATCGACGTGGCGCTGCGGATCGGCCAGGCCGCTGCCGCCGGCGGCAGCGGCACGCCGGCCGGCGTG
CGCAAGATCGGCGAGAGCCCGCGGCGCGTGGTCGGCTCGCATGCCTATTTCGCGCGCGCGGGGATTCCGCATCTGCCGCA
GGACCTGGCCCGGCATCAGGTGGTCGTGCATGACCGGCGCGCCGGCGGCGCGGTCTGGACGTTCCGCCGCCACGATACCG
TGCTGGCCGTCGAGACCTCGGGACGGCTGCGCGTGCGTGAGGCCGAAGGCGTGCGCGCGGCCGCGCTCGCCGGACTTGGG
CTGGCGATCGGCTCCGACTGGCTGTTCGCCGACGCGCTGCGCGACGGGCGCCTCGCGGCCGCGCTCGAGGGCTGGACGCT
GCCGCCCGCCGAACTGTGGGCGGCGTTTCCCGCCGGCCGGCCCGCCACCTCGCGTGCCCGGGCCTTCGTGGCGTTCGTCG
AGGCGATGCTCGGCGTCGCGGCCGCGCAGCGCGATCTGGCATGA

Upstream 100 bases:

>100_bases
GCTCGCCGCGTCGCGGCACGCGAGATGGGGCCGTACCCGGCCACTGCCGCGTCGCGCGGCTGCTATGCTGATTTGACGGA
GGAATCGGGAGGACCCGCCG

Downstream 100 bases:

>100_bases
GCCCCGCGCGGCCCGCCTCGTCAGGGCGTCGAGACAGCGCGATTGCGATTCCTTTGTATCGCGCCTCGTCAATCTCGAGG
CTTTCGAGCGTCGAATCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDRLSAMASFVAAIETGSFSAAARRLGIGQPAVSKSIANLERQVGVPLLARTTHGLMPTEAGQQYYERARRLLDDAEEAE
QAVRGAGASLAGTLRVGVPVAFARLQLVPALESFLDAHPDLVVELLLDDRHADLGAERIDVALRIGQAAAAGGSGTPAGV
RKIGESPRRVVGSHAYFARAGIPHLPQDLARHQVVVHDRRAGGAVWTFRRHDTVLAVETSGRLRVREAEGVRAAALAGLG
LAIGSDWLFADALRDGRLAAALEGWTLPPAELWAAFPAGRPATSRARAFVAFVEAMLGVAAAQRDLA

Sequences:

>Translated_307_residues
MDRLSAMASFVAAIETGSFSAAARRLGIGQPAVSKSIANLERQVGVPLLARTTHGLMPTEAGQQYYERARRLLDDAEEAE
QAVRGAGASLAGTLRVGVPVAFARLQLVPALESFLDAHPDLVVELLLDDRHADLGAERIDVALRIGQAAAAGGSGTPAGV
RKIGESPRRVVGSHAYFARAGIPHLPQDLARHQVVVHDRRAGGAVWTFRRHDTVLAVETSGRLRVREAEGVRAAALAGLG
LAIGSDWLFADALRDGRLAAALEGWTLPPAELWAAFPAGRPATSRARAFVAFVEAMLGVAAAQRDLA
>Mature_307_residues
MDRLSAMASFVAAIETGSFSAAARRLGIGQPAVSKSIANLERQVGVPLLARTTHGLMPTEAGQQYYERARRLLDDAEEAE
QAVRGAGASLAGTLRVGVPVAFARLQLVPALESFLDAHPDLVVELLLDDRHADLGAERIDVALRIGQAAAAGGSGTPAGV
RKIGESPRRVVGSHAYFARAGIPHLPQDLARHQVVVHDRRAGGAVWTFRRHDTVLAVETSGRLRVREAEGVRAAALAGLG
LAIGSDWLFADALRDGRLAAALEGWTLPPAELWAAFPAGRPATSRARAFVAFVEAMLGVAAAQRDLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=30.7692307692308, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=28.4745762711864, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=28.3783783783784, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=27.8745644599303, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789639, Length=192, Percent_Identity=32.2916666666667, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787589, Length=300, Percent_Identity=28.6666666666667, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=29.553264604811, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=29.4573643410853, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788297, Length=153, Percent_Identity=32.6797385620915, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=32, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=25.8555133079848, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32370; Mature: 32370

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLSAMASFVAAIETGSFSAAARRLGIGQPAVSKSIANLERQVGVPLLARTTHGLMPTE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCH
AGQQYYERARRLLDDAEEAEQAVRGAGASLAGTLRVGVPVAFARLQLVPALESFLDAHPD
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHCCCHH
LVVELLLDDRHADLGAERIDVALRIGQAAAAGGSGTPAGVRKIGESPRRVVGSHAYFARA
HHHHHHHCCCCCCCCHHHHHHHHEECCHHCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHC
GIPHLPQDLARHQVVVHDRRAGGAVWTFRRHDTVLAVETSGRLRVREAEGVRAAALAGLG
CCCCCHHHHHHCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEECCCCCHHHHHHHHH
LAIGSDWLFADALRDGRLAAALEGWTLPPAELWAAFPAGRPATSRARAFVAFVEAMLGVA
HHHCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AAQRDLA
HHHHCCC
>Mature Secondary Structure
MDRLSAMASFVAAIETGSFSAAARRLGIGQPAVSKSIANLERQVGVPLLARTTHGLMPTE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCH
AGQQYYERARRLLDDAEEAEQAVRGAGASLAGTLRVGVPVAFARLQLVPALESFLDAHPD
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHCCCHH
LVVELLLDDRHADLGAERIDVALRIGQAAAAGGSGTPAGVRKIGESPRRVVGSHAYFARA
HHHHHHHCCCCCCCCHHHHHHHHEECCHHCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHC
GIPHLPQDLARHQVVVHDRRAGGAVWTFRRHDTVLAVETSGRLRVREAEGVRAAALAGLG
CCCCCHHHHHHCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEECCCCCHHHHHHHHH
LAIGSDWLFADALRDGRLAAALEGWTLPPAELWAAFPAGRPATSRARAFVAFVEAMLGVA
HHHCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AAQRDLA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]