| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is dtd [H]
Identifier: 238026241
GI number: 238026241
Start: 603350
End: 603808
Strand: Direct
Name: dtd [H]
Synonym: bglu_1g05740
Alternate gene names: 238026241
Gene position: 603350-603808 (Clockwise)
Preceding gene: 238026240
Following gene: 238026242
Centisome position: 15.44
GC content: 72.77
Gene sequence:
>459_bases ATGATCGCGCTGATCCAGCGCGTGCGGCGCGCCGACGTGCGCGTCGGCGAGCGCGTGACCGGGCAGATCGGCGCGGGCCT GCTCGCGCTCGTCTGCGCCGAGCGCGACGACACCGAGGCACAGGCCGACAAGCTGCTCGCGAAAGTGCTCGGCTACCGCG TGTTCAGCGACGCGGCCGGCAAGATGAACCTGCCCGTCACGAATCTCGACGGCGCGGGCACGGCGGGCGGCCTGCTGCTC GTCTCGCAGTTCACGCTCGCGGCCGACACCCGCAGCGGCATGCGGCCGAGCTTCACGCCAGCCGCCCCGCCCGAAGCAGG CGCGCGGCTGTTCGCCTACTTCGTCGAAGCGGCGCGGGCGCGGCACCCGATCGTCGAGACCGGCGAGTTCGGCGCCGAGA TGCAGGTCTCGCTCGTCAACGACGGGCCCGTCACGTTCTGGCTGCAGGCTCGCGCCTGA
Upstream 100 bases:
>100_bases TCGACGGCACCACCGTTTCCGACAAGGGCCTCAAGGTCGAGGCGGGCGAGTACGTGGTTCAAGTCGGCAAGCGGCGCTTC GCGCGCGTGACGGTCGGCGC
Downstream 100 bases:
>100_bases CAGGCCGGCGCGCGACGGACCCGCGCCGGCCGGCTGCCGCGCCCGCTCGGCTCACTGCTTCGCTTCTTCGCATTCCGATC GGCCAACCGATGACCACGAC
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAGKMNLPVTNLDGAGTAGGLLL VSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARARHPIVETGEFGAEMQVSLVNDGPVTFWLQARA
Sequences:
>Translated_152_residues MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAGKMNLPVTNLDGAGTAGGLLL VSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARARHPIVETGEFGAEMQVSLVNDGPVTFWLQARA >Mature_152_residues MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAGKMNLPVTNLDGAGTAGGLLL VSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARARHPIVETGEFGAEMQVSLVNDGPVTFWLQARA
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=154, Percent_Identity=37.012987012987, Blast_Score=90, Evalue=6e-19, Organism=Escherichia coli, GI1790320, Length=149, Percent_Identity=61.0738255033557, Blast_Score=175, Evalue=1e-45, Organism=Caenorhabditis elegans, GI115533292, Length=154, Percent_Identity=37.6623376623377, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6319982, Length=152, Percent_Identity=38.8157894736842, Blast_Score=96, Evalue=3e-21, Organism=Drosophila melanogaster, GI281361569, Length=152, Percent_Identity=34.8684210526316, Blast_Score=79, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 16115; Mature: 16115
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAG CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC KMNLPVTNLDGAGTAGGLLLVSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARA CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RHPIVETGEFGAEMQVSLVNDGPVTFWLQARA CCCCCCCCCCCCEEEEEEECCCCEEEEEEECC >Mature Secondary Structure MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAG CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC KMNLPVTNLDGAGTAGGLLLVSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARA CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RHPIVETGEFGAEMQVSLVNDGPVTFWLQARA CCCCCCCCCCCCEEEEEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA