| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026070
Identifier: 238026070
GI number: 238026070
Start: 412573
End: 413565
Strand: Reverse
Name: 238026070
Synonym: bglu_1g03980
Alternate gene names: NA
Gene position: 413565-412573 (Counterclockwise)
Preceding gene: 238026071
Following gene: 238026069
Centisome position: 10.59
GC content: 68.18
Gene sequence:
>993_bases ATGACGCAAACGGTCCAGGCTCAGATCGCCTATTTCGGCAAGATCCCGTCGCGCGGCGACTTCGTGAAGAGCGCGCACAA CCCGCAGTTGCTGCAGACGCTCGACCGCTGGATCGCGCAGGCCATGGAGCTGCTGGCCGACGACCCGCGCTGGAAGATCG TCTACGAGAACGCGCGGCCCATGCATTTCGCGTTCATCGGCACGCGCAGCAAGCTCGCCATCGCCGGCCACATGGTGGCC AGCCACGACGCCTCGAACCGGCGCTTTCCGTTCCTCGCCGCCACCGCGCTCGAGGTGGACCGGCCGCTCACCTTCGTCGC GCGCAGCCCGCTCGCGTTCGCGCGGCTCTGGCAGCGCGCCGCCACGCTGATGCGTCCGCTGCTGGGCAGCGACGAGCCGC CCGGCGCGCTGCAGGCGCTCGGCGAGGCGCAGGTGCCGATCGACACCGGCGGCCCCGGCAGCGCGCACGACGGCACGTTC AACGATTTCGTCGAGCACCAGTCGCTGTTCGGGCTCGAGCAAATGCTGCTCGCGAGCGGCCACCCGGTGAAGCTGCGCGG CGCGATGCTCGCGCTCGGCTCGCTGCTGCGCCCGGTGATGCAAAGCGGCTCGTCGCACATCGAGCGCGGGCTCACGCTGC CGCTGCCGGTCGATCCGTTCTATCGCAGCCTGGTGGCGGCGTTCTGGATGGAGCTGATCGCGCCGTTCGTCTCGCAGGCC GATTTCGAGCTGGCGATCTTCATCGGCTCCATCGCCGAGCGCGAGCGCCTGATCATCGGCTTCAACGGCGCCTCGGCCCG GACGCTGCACAGCGTGGTCGATCCGCAGACCTATTCGCAACACAACATCGACATCGACGACCCGGAATGGGTCGATGCCC ATGCGCAACACGATCCCGCGACCAGCAAACTCGTCAGCTACCTCGAACAACCGCAACTGTCGCTGCGCGTGGCGATCGAC ACGTTCCGCGAAGCCTTCGTCGCAGGAGCCTGA
Upstream 100 bases:
>100_bases TCAACGCGACGGCACAGGCGCCGGCCGCCACGTCCGGCGTGAGCCCGGCCGCGGCCGCCACGGGCGCGGCTGCCAACGCA TCGAACGCACAGGGGGCGCA
Downstream 100 bases:
>100_bases CGCCATGACGACCTCCGTGCTCCCGCCGCGCCGCCGCCAGCTGGCCGCCGCGCTCGCCGCCGGCGCCGCGCTCTGCGCGG GCGGCCTGGCCCTGCTCGCC
Product: type VI secretion-associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARPMHFAFIGTRSKLAIAGHMVA SHDASNRRFPFLAATALEVDRPLTFVARSPLAFARLWQRAATLMRPLLGSDEPPGALQALGEAQVPIDTGGPGSAHDGTF NDFVEHQSLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELIAPFVSQA DFELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPATSKLVSYLEQPQLSLRVAID TFREAFVAGA
Sequences:
>Translated_330_residues MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARPMHFAFIGTRSKLAIAGHMVA SHDASNRRFPFLAATALEVDRPLTFVARSPLAFARLWQRAATLMRPLLGSDEPPGALQALGEAQVPIDTGGPGSAHDGTF NDFVEHQSLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELIAPFVSQA DFELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPATSKLVSYLEQPQLSLRVAID TFREAFVAGA >Mature_329_residues TQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARPMHFAFIGTRSKLAIAGHMVAS HDASNRRFPFLAATALEVDRPLTFVARSPLAFARLWQRAATLMRPLLGSDEPPGALQALGEAQVPIDTGGPGSAHDGTFN DFVEHQSLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELIAPFVSQAD FELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPATSKLVSYLEQPQLSLRVAIDT FREAFVAGA
Specific function: Unknown
COG id: COG3913
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36284; Mature: 36153
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARP CCCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC MHFAFIGTRSKLAIAGHMVASHDASNRRFPFLAATALEVDRPLTFVARSPLAFARLWQRA EEEEEECCCCCEEHHHHHHHCCCCCCCCCCEEEHHHHHCCCCCHHHHCCHHHHHHHHHHH ATLMRPLLGSDEPPGALQALGEAQVPIDTGGPGSAHDGTFNDFVEHQSLFGLEQMLLASG HHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELIAPFVSQA CCEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC DFELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPA CCEEEEEEHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCH TSKLVSYLEQPQLSLRVAIDTFREAFVAGA HHHHHHHHHCCCCEEHHHHHHHHHHHHCCC >Mature Secondary Structure TQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARP CCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC MHFAFIGTRSKLAIAGHMVASHDASNRRFPFLAATALEVDRPLTFVARSPLAFARLWQRA EEEEEECCCCCEEHHHHHHHCCCCCCCCCCEEEHHHHHCCCCCHHHHCCHHHHHHHHHHH ATLMRPLLGSDEPPGALQALGEAQVPIDTGGPGSAHDGTFNDFVEHQSLFGLEQMLLASG HHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELIAPFVSQA CCEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC DFELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPA CCEEEEEEHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCH TSKLVSYLEQPQLSLRVAIDTFREAFVAGA HHHHHHHHHCCCCEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA