| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026060
Identifier: 238026060
GI number: 238026060
Start: 400575
End: 401219
Strand: Direct
Name: 238026060
Synonym: bglu_1g03880
Alternate gene names: NA
Gene position: 400575-401219 (Clockwise)
Preceding gene: 238026056
Following gene: 238026061
Centisome position: 10.25
GC content: 71.16
Gene sequence:
>645_bases ATGAAAGACCGACTGTTCGCAAAACTCTCCGTAGTGGTGATGGCATGTGGTGTGATCGCAGGTTGCGCAACGCAGCCCTC GGCTCCGCCGACACCCGAGGCGTTCAACAAATCGCTCGAGGACGCGGACGCGGTCGCGAAGGCGGGAGACCAGGACAAGG CGATCGGCCTCTACCAGCAGCTCGCGAAGTCCGACCCGACGCGCGAGGAGCCGTGGGCGCGCATCGCGCAGATCCAGTTC CAGCAAGGCCATTACGGCCAGGCCATCGTCGCGGCGCAGGAAGCGCTGCAGCGTGACAACACCGACCGCCAGTCGAAGAG CGTGCTGGCCGTGGCGGGGCTGCGCATCGCCACCGAATCGCTGAGCGAGCTGCGCCAGGATTCGTCGCTGGCCGGCGACG CGAAGTCCGACGCGCAGGTGCTGGCCAAGCAGTTGCGCGACACCCTCGGCGAGGACGCGCTGTTCCCGCCCGAGCAGGCC GACAAGCCCCAGCCGAAGCGCCGCAAGGTCTACCGCAGGCACGTCGCGCGCGAGGCGGCGCCGGCTGCCGCGGCACCGGC GGCCGAGGCACCGAAGCCGGCCGCGCCGGCGGCACCGGCGGCCCCGGCCAAGGGCGGCGCCGACCCGTTCAGCGCGCTGC GCTGA
Upstream 100 bases:
>100_bases TGAATTATGAAAAATTGATCGGTACTATACCCGCGCACTAGCACCAAAGCAAAACTACTGAAACTCAACGATTTAAAACT CCGCGCCCGGTGATAAAACG
Downstream 100 bases:
>100_bases GCACCCCGCACGCCCACTACCACACGTTATCGGGAGAGCCGTCATGGCAAAAAAAGAAAGTATCCAGAAACGCCTGCAAA AGGTGCGGCCGCCCCGCGTG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: TPR Repeat-Containing Protein; TPR Repeat; TPR Repeat Protein; Tetratricopeptide Repeat Family Protein; Tetratricopeptide Repeat-Containing Protein
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQLAKSDPTREEPWARIAQIQF QQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATESLSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQA DKPQPKRRKVYRRHVAREAAPAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR
Sequences:
>Translated_214_residues MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQLAKSDPTREEPWARIAQIQF QQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATESLSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQA DKPQPKRRKVYRRHVAREAAPAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR >Mature_214_residues MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQLAKSDPTREEPWARIAQIQF QQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATESLSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQA DKPQPKRRKVYRRHVAREAAPAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22584; Mature: 22584
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQ CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LAKSDPTREEPWARIAQIQFQQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATES HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQADKPQPKRRKVYRRHVAREAA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC PAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC >Mature Secondary Structure MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQ CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LAKSDPTREEPWARIAQIQFQQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATES HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQADKPQPKRRKVYRRHVAREAA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC PAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA