| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026059
Identifier: 238026059
GI number: 238026059
Start: 399588
End: 400205
Strand: Reverse
Name: 238026059
Synonym: bglu_1g03870
Alternate gene names: NA
Gene position: 400205-399588 (Counterclockwise)
Preceding gene: 238026069
Following gene: 238026058
Centisome position: 10.24
GC content: 67.31
Gene sequence:
>618_bases ATGACTCCGTTTCTCTCCCGCTTCGCGCTGCCGCTCGCGGCCTGCGCGCTTCTGGCAGGCTGCGCGGCGGCGGTGCCGCT GCTCGGTTCGGCAGGCAGCGCCGCGCTGCAGATGGTCGGCATCGGCAAGCCCGATGTGCCCGACGCGCAGAAGCCGCCGC GCAATCTGGCCGTGACCCTCTACGCCGCGCCGAACCTGAACGCCGCCAACGACAACCGGCCGCTCGCATTAGTAGTAAGG CTCTACACGCTGAAGGATCCGACCTCGTTCATGCAGGCACCGTTCGACGCGTTCACCGATCCCGCCAAGGAGAAGGCCAC GCTCGGCGCCGACCTGCTCAGCGTGCGCGAGGTGACGCTGATTCCGGGGCAGCACTACAACGCCACCGAGAAGGTCTCGC GCGAGGCGCAGGCGTTCGGCGTCGTCGCGCTGTTTCGCTCGCCCGCGCTGCAACGCTGGAAGCTGGCATTCGATCCGGCG AAATCGGAGAAATCCGGCATAATCATCGGCCTGCACAACTGCGCGATGACGGTGACGGGCGGTAACGTGATCGCGCCGCA GCAGGGCATGCCGGCGCAGCAGCTCAATATGCTGTCGTCGGTCAGCTGCGGCGGCTGA
Upstream 100 bases:
>100_bases GGGCAGCTGTTACCGGGGTGTTGGACGCGCCCGCAACATGACCACACACGCTATCCAGGCATTTCTGACAGGAACCGACT CGCGTCGCCCTCGACCCACG
Downstream 100 bases:
>100_bases CGGACTCGATGACGATTCAAAGTCAATTTGACCAGTTTGACATTTACGTGACCCGGCGCGCGATAAGCCGGGCTACCACA TAATCACGTTCGGGATGTGA
Product: putative type VI secretion system protein TssJ
Products: NA
Alternate protein names: Type VI Secretion Lipoprotein; Lipoprotein
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MTPFLSRFALPLAACALLAGCAAAVPLLGSAGSAALQMVGIGKPDVPDAQKPPRNLAVTLYAAPNLNAANDNRPLALVVR LYTLKDPTSFMQAPFDAFTDPAKEKATLGADLLSVREVTLIPGQHYNATEKVSREAQAFGVVALFRSPALQRWKLAFDPA KSEKSGIIIGLHNCAMTVTGGNVIAPQQGMPAQQLNMLSSVSCGG
Sequences:
>Translated_205_residues MTPFLSRFALPLAACALLAGCAAAVPLLGSAGSAALQMVGIGKPDVPDAQKPPRNLAVTLYAAPNLNAANDNRPLALVVR LYTLKDPTSFMQAPFDAFTDPAKEKATLGADLLSVREVTLIPGQHYNATEKVSREAQAFGVVALFRSPALQRWKLAFDPA KSEKSGIIIGLHNCAMTVTGGNVIAPQQGMPAQQLNMLSSVSCGG >Mature_204_residues TPFLSRFALPLAACALLAGCAAAVPLLGSAGSAALQMVGIGKPDVPDAQKPPRNLAVTLYAAPNLNAANDNRPLALVVRL YTLKDPTSFMQAPFDAFTDPAKEKATLGADLLSVREVTLIPGQHYNATEKVSREAQAFGVVALFRSPALQRWKLAFDPAK SEKSGIIIGLHNCAMTVTGGNVIAPQQGMPAQQLNMLSSVSCGG
Specific function: Unknown
COG id: COG3521
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21427; Mature: 21296
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPFLSRFALPLAACALLAGCAAAVPLLGSAGSAALQMVGIGKPDVPDAQKPPRNLAVTL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE YAAPNLNAANDNRPLALVVRLYTLKDPTSFMQAPFDAFTDPAKEKATLGADLLSVREVTL EECCCCCCCCCCCCEEEEEEEECCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHEEEEE IPGQHYNATEKVSREAQAFGVVALFRSPALQRWKLAFDPAKSEKSGIIIGLHNCAMTVTG CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCEEEEEECEEEEECC GNVIAPQQGMPAQQLNMLSSVSCGG CCEECCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TPFLSRFALPLAACALLAGCAAAVPLLGSAGSAALQMVGIGKPDVPDAQKPPRNLAVTL CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE YAAPNLNAANDNRPLALVVRLYTLKDPTSFMQAPFDAFTDPAKEKATLGADLLSVREVTL EECCCCCCCCCCCCEEEEEEEECCCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHEEEEE IPGQHYNATEKVSREAQAFGVVALFRSPALQRWKLAFDPAKSEKSGIIIGLHNCAMTVTG CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCEEEEEECEEEEECC GNVIAPQQGMPAQQLNMLSSVSCGG CCEECCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA