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The map label for this gene is cph2 [H]

Identifier: 238025892

GI number: 238025892

Start: 227939

End: 229027

Strand: Reverse

Name: cph2 [H]

Synonym: bglu_1g02180

Alternate gene names: 238025892

Gene position: 229027-227939 (Counterclockwise)

Preceding gene: 238025893

Following gene: 238025887

Centisome position: 5.86

GC content: 70.98

Gene sequence:

>1089_bases
ATGGAACTGGAACCGGCCGGTGCACCGAACCACCGGCCCGAGGAATCGGGCACCGGCCCACAGGGCGACGACGCCGCGCT
CGAGGCGGCGCGGCGCGCGTTGCCCGCCCATACCGCGACGTCCGACACGGCGGTGGTGCTGCTCGTCGACGATCAGCCGA
TCGTGCGCGAGGCGGTCCGCCAGGCGCTGGCCGGCGAGGCCGGCATCGAGCTGCGCTACTGCCAGGATGCGACGCAGGCG
CTCGACACCGCGCGCCAGACCAGGCCGACGCTGATCCTGCAGGATCTGGTGATGCCCGAGGTCGACGGCCTCACGCTGGT
GCAGCAGTATCGCCGCACGCCGGAGCTGCGCGACGTGCCGATCATCGTGCTGTCGACCAAGGAGGAGCCGCGCATCAAGC
AGGCCGCCTTCGAGGTCGGTGCCAACGACTACCTGATCAAGCTGCCCGACCGCGTCGAGCTGGTCGCGCGCATCCGCTAT
CACTCGCGCGCCTATGTGAACCTGCTGCAGCTGAACACCGCGTATCGCGCCCTGCGGCAATCCCAGGAAGAGTTGCTGCT
CGCCAATCGCGAGCTCGAGCGGCTCTCGCAGTCGGACGGCCTCACCTCGCTGCCGAACCGGCGCTATCTGGATGCCTATC
TCGAAGGAGAGTGGCGCAGGAGCCTGCGCGAGGGAGCCGAGCTGTCGATGCTGATGATCGACGTCGATCGCTTCAAGCAG
TACAACGACACCTACGGCCACGTGGCGGGAGACGACGTGCTGCGCCAGGTGGGTGCCGCGCTGCAGCGCTGCATGAGCCG
GCCCGGCGATCTCGCCGCGCGCTTCGGCGGCGAGGAGTTCGGTGTCGTGCTGCCCGGCACGCCGGCCGGCGGCGCGCGGC
TCGTGGCCGAGAAGATCCGCCTCGCGGTGGCCGCCATGCAGGTGCCGCATTCGGGCGGCGCGGCCGACGGCATCGTCACG
GTCAGCATCGGCGGCGCCTGCACCATCGCGACGCCGAGCGGATCGACCACGGCGCTGCTCGAGGCCGCCGACGCCGCGCT
CTACGAGGCCAAGCGCGGCGGGCGCAACCGCGCCGTGATCTCGGCCTGA

Upstream 100 bases:

>100_bases
GATGCGCCGGGCCGGCGCGCCGAGCGCCGGTGCCACCCTGGAACTCGACGAGTCGGCCGCCGGACCGGCAACGCATTGCG
CATTCTGAAGGAAACCACGC

Downstream 100 bases:

>100_bases
GCCGGGCCGCTGCCGCAGCGCGATGATCACGGCCTGCGGCATGCGCGGTCCGAAGCCGAACAGGAGCAGCGGGCTCCCTG
CACCATGCCAGATGCGCGCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MELEPAGAPNHRPEESGTGPQGDDAALEAARRALPAHTATSDTAVVLLVDDQPIVREAVRQALAGEAGIELRYCQDATQA
LDTARQTRPTLILQDLVMPEVDGLTLVQQYRRTPELRDVPIIVLSTKEEPRIKQAAFEVGANDYLIKLPDRVELVARIRY
HSRAYVNLLQLNTAYRALRQSQEELLLANRELERLSQSDGLTSLPNRRYLDAYLEGEWRRSLREGAELSMLMIDVDRFKQ
YNDTYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIRLAVAAMQVPHSGGAADGIVT
VSIGGACTIATPSGSTTALLEAADAALYEAKRGGRNRAVISA

Sequences:

>Translated_362_residues
MELEPAGAPNHRPEESGTGPQGDDAALEAARRALPAHTATSDTAVVLLVDDQPIVREAVRQALAGEAGIELRYCQDATQA
LDTARQTRPTLILQDLVMPEVDGLTLVQQYRRTPELRDVPIIVLSTKEEPRIKQAAFEVGANDYLIKLPDRVELVARIRY
HSRAYVNLLQLNTAYRALRQSQEELLLANRELERLSQSDGLTSLPNRRYLDAYLEGEWRRSLREGAELSMLMIDVDRFKQ
YNDTYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIRLAVAAMQVPHSGGAADGIVT
VSIGGACTIATPSGSTTALLEAADAALYEAKRGGRNRAVISA
>Mature_362_residues
MELEPAGAPNHRPEESGTGPQGDDAALEAARRALPAHTATSDTAVVLLVDDQPIVREAVRQALAGEAGIELRYCQDATQA
LDTARQTRPTLILQDLVMPEVDGLTLVQQYRRTPELRDVPIIVLSTKEEPRIKQAAFEVGANDYLIKLPDRVELVARIRY
HSRAYVNLLQLNTAYRALRQSQEELLLANRELERLSQSDGLTSLPNRRYLDAYLEGEWRRSLREGAELSMLMIDVDRFKQ
YNDTYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIRLAVAAMQVPHSGGAADGIVT
VSIGGACTIATPSGSTTALLEAADAALYEAKRGGRNRAVISA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=41.5204678362573, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=186, Percent_Identity=38.1720430107527, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=33.695652173913, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=35.0877192982456, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=32.9545454545455, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=140, Percent_Identity=37.8571428571429, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=31.2138728323699, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=134, Percent_Identity=37.3134328358209, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=31.638418079096, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=34.9056603773585, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788394, Length=118, Percent_Identity=34.7457627118644, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39243; Mature: 39243

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEPAGAPNHRPEESGTGPQGDDAALEAARRALPAHTATSDTAVVLLVDDQPIVREAVR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
QALAGEAGIELRYCQDATQALDTARQTRPTLILQDLVMPEVDGLTLVQQYRRTPELRDVP
HHHCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
IIVLSTKEEPRIKQAAFEVGANDYLIKLPDRVELVARIRYHSRAYVNLLQLNTAYRALRQ
EEEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQEELLLANRELERLSQSDGLTSLPNRRYLDAYLEGEWRRSLREGAELSMLMIDVDRFKQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEEEEHHHHHH
YNDTYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIR
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHH
LAVAAMQVPHSGGAADGIVTVSIGGACTIATPSGSTTALLEAADAALYEAKRGGRNRAVI
HHHHHHHCCCCCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
SA
EC
>Mature Secondary Structure
MELEPAGAPNHRPEESGTGPQGDDAALEAARRALPAHTATSDTAVVLLVDDQPIVREAVR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
QALAGEAGIELRYCQDATQALDTARQTRPTLILQDLVMPEVDGLTLVQQYRRTPELRDVP
HHHCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
IIVLSTKEEPRIKQAAFEVGANDYLIKLPDRVELVARIRYHSRAYVNLLQLNTAYRALRQ
EEEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQEELLLANRELERLSQSDGLTSLPNRRYLDAYLEGEWRRSLREGAELSMLMIDVDRFKQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEEEEHHHHHH
YNDTYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIR
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHH
LAVAAMQVPHSGGAADGIVTVSIGGACTIATPSGSTTALLEAADAALYEAKRGGRNRAVI
HHHHHHHCCCCCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
SA
EC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]