| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025822
Identifier: 238025822
GI number: 238025822
Start: 150316
End: 151128
Strand: Reverse
Name: 238025822
Synonym: bglu_1g01470
Alternate gene names: NA
Gene position: 151128-150316 (Counterclockwise)
Preceding gene: 238025825
Following gene: 238025821
Centisome position: 3.87
GC content: 64.08
Gene sequence:
>813_bases ATGGCAACCAACAAAACGAAGTTTTTCCGCGTAGCAGTCGAAGGCGCGACTGTCGACGGCCGCGAAATCAAGCGTGAATG GCTCACGCAGATGGCGAAGAACTACAACCGCGAACTGTACGGCGCACGCCTGAACATCGAGCACCTGAAGGGATGGGCAC CGCTCTCGGCCACCAACCCGTTCGGCGCATACGGCGACGTGATCGCGCTGAAGGCATCCGAGATCGAAGACGGCCCGCTG AAAGGCAAGATGGGGCTGTACGCGCAGCTCGATCCGACCGACGAGCTGGTCGCGCTGTCGAAGAAACGCCAGAAGGTTTT CACGTCGATCGAAGTCAATCCCGACTTCGCCGACATCGGCGAGGCGTATCTGGTCGGCCTGGCCGCGACCGACGATCCGG CGAGCCTCGGCACCGAAGCCCTGCAATTCGCAGCACGTCGTTCGAACAACCTGTTCTCGGCCGCGTGCGAAACGTTGATC GAGTTCGACGGCGAGCCCGAATCAACGAGCCTGCTGTCTATTGTGAAGAGCATGTTCGCGCGCAATCGCTCGACCGACGA CCAACGCGACGCCGACGTGCGCCACGCAGTCGAAGAAATCGCCGGTTTCGTGAGCCAGCAGGGCTGCGACGTCGCCGCGC TGCGCGTCGACCTCACCGCCGCGCAGCAAGACGCGGCCGCCGCGAAAAAGCGCGCCGACGAAGCGGTCACCGCCGTCGAA GCACTGACCACGAAGCTGTCGGCGACCGATAACGGCGCACCGCGGCGCCAGCTGTCGACCGGCTCGACCGGCGAGCTCGC GACCGACTGCTGA
Upstream 100 bases:
>100_bases TACGTACCCGTGCGAGCAACATACGCCGCTCGTTGAGCCGTAGCGCGTGAAGGTCGAACATGAGAACCACATTCACTGAC CCACGGTTCGACCTCTCTCT
Downstream 100 bases:
>100_bases TCCCTTCCACGCTCACACCCCGGAGAATCCAACTCATGAAGAAGGAAACGCGCCAAGCGTACCGAAAGTACGCCACGCAA ATTGCCAAGCTGAACGACAC
Product: phage capsid scaffolding protein (GPO)
Products: NA
Alternate protein names: Capsid Scaffolding; Capsid Scaffolding Protein; Phage Capsid Scaffolding; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Scaffold Protein; Presumed Capsid-Scaffolding Protein; Capsid Scaffolding Protein Bacteriophage Origin; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MATNKTKFFRVAVEGATVDGREIKREWLTQMAKNYNRELYGARLNIEHLKGWAPLSATNPFGAYGDVIALKASEIEDGPL KGKMGLYAQLDPTDELVALSKKRQKVFTSIEVNPDFADIGEAYLVGLAATDDPASLGTEALQFAARRSNNLFSAACETLI EFDGEPESTSLLSIVKSMFARNRSTDDQRDADVRHAVEEIAGFVSQQGCDVAALRVDLTAAQQDAAAAKKRADEAVTAVE ALTTKLSATDNGAPRRQLSTGSTGELATDC
Sequences:
>Translated_270_residues MATNKTKFFRVAVEGATVDGREIKREWLTQMAKNYNRELYGARLNIEHLKGWAPLSATNPFGAYGDVIALKASEIEDGPL KGKMGLYAQLDPTDELVALSKKRQKVFTSIEVNPDFADIGEAYLVGLAATDDPASLGTEALQFAARRSNNLFSAACETLI EFDGEPESTSLLSIVKSMFARNRSTDDQRDADVRHAVEEIAGFVSQQGCDVAALRVDLTAAQQDAAAAKKRADEAVTAVE ALTTKLSATDNGAPRRQLSTGSTGELATDC >Mature_269_residues ATNKTKFFRVAVEGATVDGREIKREWLTQMAKNYNRELYGARLNIEHLKGWAPLSATNPFGAYGDVIALKASEIEDGPLK GKMGLYAQLDPTDELVALSKKRQKVFTSIEVNPDFADIGEAYLVGLAATDDPASLGTEALQFAARRSNNLFSAACETLIE FDGEPESTSLLSIVKSMFARNRSTDDQRDADVRHAVEEIAGFVSQQGCDVAALRVDLTAAQQDAAAAKKRADEAVTAVEA LTTKLSATDNGAPRRQLSTGSTGELATDC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29082; Mature: 28951
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATNKTKFFRVAVEGATVDGREIKREWLTQMAKNYNRELYGARLNIEHLKGWAPLSATNP CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHEEEEEHHHHCCCCCCCCCCC FGAYGDVIALKASEIEDGPLKGKMGLYAQLDPTDELVALSKKRQKVFTSIEVNPDFADIG CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEECCCCHHHCC EAYLVGLAATDDPASLGTEALQFAARRSNNLFSAACETLIEFDGEPESTSLLSIVKSMFA HHHEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH RNRSTDDQRDADVRHAVEEIAGFVSQQGCDVAALRVDLTAAQQDAAAAKKRADEAVTAVE CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH ALTTKLSATDNGAPRRQLSTGSTGELATDC HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ATNKTKFFRVAVEGATVDGREIKREWLTQMAKNYNRELYGARLNIEHLKGWAPLSATNP CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHEEEEEHHHHCCCCCCCCCCC FGAYGDVIALKASEIEDGPLKGKMGLYAQLDPTDELVALSKKRQKVFTSIEVNPDFADIG CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEECCCCHHHCC EAYLVGLAATDDPASLGTEALQFAARRSNNLFSAACETLIEFDGEPESTSLLSIVKSMFA HHHEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH RNRSTDDQRDADVRHAVEEIAGFVSQQGCDVAALRVDLTAAQQDAAAAKKRADEAVTAVE CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH ALTTKLSATDNGAPRRQLSTGSTGELATDC HHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA