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The map label for this gene is rbsB [H]

Identifier: 238025178

GI number: 238025178

Start: 2305361

End: 2306308

Strand: Direct

Name: rbsB [H]

Synonym: bglu_2g18490

Alternate gene names: 238025178

Gene position: 2305361-2306308 (Clockwise)

Preceding gene: 238025177

Following gene: 238025179

Centisome position: 81.54

GC content: 65.08

Gene sequence:

>948_bases
ATGCGGAAACTTTCCCTGCTGGCGGTAGCGGCAATGGCGTGCGCGGCATTCAGTACCGGAGCGTACGCGGCGGGCGGCGA
GATCGCCGTGATCGTCAAGACGGTCAATTCGAACTACTGGCAGAACGTGCAGAAGGGCGCGAAGGCGGCGCTCAGCGACG
CACCGGGCTACACGATGACGTTCCAGGGGCCGGCGTCCGAATCGAACATCGCCGACGAAGTGAACATGGTGGAGAACGCC
GTGAACCGGCACGTCGCCGGCATCGTGCTGGCCGCGTCCGATCCGGACGCGCTGGTGCCGGCCATGAAGAAGGCCTGGGA
GGCGCATATCCCGGTGGTGCTGATCGATTCACCGGTCTCGGCGTCGGGCAAGCCGTACTACCAGTCGTTCCTGTCCACCG
ACAACGAGAAGGCCGGCGAACTGTGCGCCAAGGCGCTGATCGACCGGGTGGGCCAGAGCGGCAAGATCGCCATCATGTCC
TACGTGCCCGGCGCCGGCTCCGAAGTGGACCGCGTGGGCGGCTTCCGCAAGTACATCGCGGCGCATTCGAAGCTGCAGAT
CGTCGGCCCGTACTACTCGCAATCGCAAATGGCGACGGCGCTGAACCAGACCACCGACGTGCTGTCGGCCAATGCCGACC
TGAAGGGCATCTTCGGCGCGAACGAGCCGACCGCGGTGGGCATGGGCCGCGCGCTCAAGCAGGCCGGCAAGGCGGGCAAG
ATCGTCGCGATCGGCTTCGACGGCAACGAGGACCTGCAGGGATTCGTGCGCGACGGCACGCTCCAGGCGATCGCCGTGCA
GGGCTCGTGGCAGATGGGCAACCAGGGCATCAAGACCGTGATCCGCGTCATCGAGCACAAGCCGGTGGCGAAGTTCGTCG
ATACCGGGGTGGTCATGATCGACAAGCAGAACCTCGATTCGAAGGAAGCGAAGAACGTCCTGTACTGA

Upstream 100 bases:

>100_bases
GCACGGTCTGGATCGACCAGTTGCGCAACCGGACGACGCGGTAATCCCACGGCATTTGATTTCCCACGAGCAGTGCAATA
ACACGAGACAGGAGCGAGAC

Downstream 100 bases:

>100_bases
AGCCCTGCCGCGGCGGCGGGCGGGCTCGCCGCCGCCGCGCCCGCCGCCCCTCTCAACCCTGCTTGCTCATTTGCCTGGTG
GCATCATGAACGCTCACGAT

Product: sugar ABC transporter periplasmic component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRKLSLLAVAAMACAAFSTGAYAAGGEIAVIVKTVNSNYWQNVQKGAKAALSDAPGYTMTFQGPASESNIADEVNMVENA
VNRHVAGIVLAASDPDALVPAMKKAWEAHIPVVLIDSPVSASGKPYYQSFLSTDNEKAGELCAKALIDRVGQSGKIAIMS
YVPGAGSEVDRVGGFRKYIAAHSKLQIVGPYYSQSQMATALNQTTDVLSANADLKGIFGANEPTAVGMGRALKQAGKAGK
IVAIGFDGNEDLQGFVRDGTLQAIAVQGSWQMGNQGIKTVIRVIEHKPVAKFVDTGVVMIDKQNLDSKEAKNVLY

Sequences:

>Translated_315_residues
MRKLSLLAVAAMACAAFSTGAYAAGGEIAVIVKTVNSNYWQNVQKGAKAALSDAPGYTMTFQGPASESNIADEVNMVENA
VNRHVAGIVLAASDPDALVPAMKKAWEAHIPVVLIDSPVSASGKPYYQSFLSTDNEKAGELCAKALIDRVGQSGKIAIMS
YVPGAGSEVDRVGGFRKYIAAHSKLQIVGPYYSQSQMATALNQTTDVLSANADLKGIFGANEPTAVGMGRALKQAGKAGK
IVAIGFDGNEDLQGFVRDGTLQAIAVQGSWQMGNQGIKTVIRVIEHKPVAKFVDTGVVMIDKQNLDSKEAKNVLY
>Mature_315_residues
MRKLSLLAVAAMACAAFSTGAYAAGGEIAVIVKTVNSNYWQNVQKGAKAALSDAPGYTMTFQGPASESNIADEVNMVENA
VNRHVAGIVLAASDPDALVPAMKKAWEAHIPVVLIDSPVSASGKPYYQSFLSTDNEKAGELCAKALIDRVGQSGKIAIMS
YVPGAGSEVDRVGGFRKYIAAHSKLQIVGPYYSQSQMATALNQTTDVLSANADLKGIFGANEPTAVGMGRALKQAGKAGK
IVAIGFDGNEDLQGFVRDGTLQAIAVQGSWQMGNQGIKTVIRVIEHKPVAKFVDTGVVMIDKQNLDSKEAKNVLY

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=301, Percent_Identity=29.2358803986711, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1790526, Length=297, Percent_Identity=27.9461279461279, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787795, Length=277, Percent_Identity=25.9927797833935, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789990, Length=195, Percent_Identity=30.7692307692308, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33139; Mature: 33139

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLSLLAVAAMACAAFSTGAYAAGGEIAVIVKTVNSNYWQNVQKGAKAALSDAPGYTMT
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
FQGPASESNIADEVNMVENAVNRHVAGIVLAASDPDALVPAMKKAWEAHIPVVLIDSPVS
ECCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC
ASGKPYYQSFLSTDNEKAGELCAKALIDRVGQSGKIAIMSYVPGAGSEVDRVGGFRKYIA
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
AHSKLQIVGPYYSQSQMATALNQTTDVLSANADLKGIFGANEPTAVGMGRALKQAGKAGK
HCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCC
IVAIGFDGNEDLQGFVRDGTLQAIAVQGSWQMGNQGIKTVIRVIEHKPVAKFVDTGVVMI
EEEEECCCCHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEEE
DKQNLDSKEAKNVLY
ECCCCCHHHHHCCCC
>Mature Secondary Structure
MRKLSLLAVAAMACAAFSTGAYAAGGEIAVIVKTVNSNYWQNVQKGAKAALSDAPGYTMT
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
FQGPASESNIADEVNMVENAVNRHVAGIVLAASDPDALVPAMKKAWEAHIPVVLIDSPVS
ECCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC
ASGKPYYQSFLSTDNEKAGELCAKALIDRVGQSGKIAIMSYVPGAGSEVDRVGGFRKYIA
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
AHSKLQIVGPYYSQSQMATALNQTTDVLSANADLKGIFGANEPTAVGMGRALKQAGKAGK
HCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCC
IVAIGFDGNEDLQGFVRDGTLQAIAVQGSWQMGNQGIKTVIRVIEHKPVAKFVDTGVVMI
EEEEECCCCHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEEE
DKQNLDSKEAKNVLY
ECCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]