| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ylbK [H]
Identifier: 238025149
GI number: 238025149
Start: 2266795
End: 2269449
Strand: Direct
Name: ylbK [H]
Synonym: bglu_2g18140
Alternate gene names: 238025149
Gene position: 2266795-2269449 (Clockwise)
Preceding gene: 238025143
Following gene: 238025152
Centisome position: 80.17
GC content: 71.6
Gene sequence:
>2655_bases ATGTCGATACCAATCGTAGAAATCCGCATCCTCACCTTCCCCGCCTCGCATCGCGAATCGCCAGCCGACCGTCTCGTCGC CCGCGCGCCGCGGCCGGCGGCCGGACCTGACGCCGCCGATCGCCGCCTCGGTCGTGATCGCCGCACGGGCCCGCGTAACG CCTGCTTGGCGCGGCTCGCGCTGGCCATGCTCGGCTGGGCCTGCTGCGTGCTGCCCGCCACGGCGCGGGCCGACACGTCC GACCGGCCGGCCGCGCAGGCCGCGCAGGCCGCGCAGGCCGCGCAGGCCGCGCCAGCCGCGCCAGCCGCGGCGGCCGACTC GACGACCTGGGCAGCCGCGCTCGCGGCGATGCAGGCGCAGCGCAATCCGAGCGACGAAGGCCGGGGTGTGCAAAAAATGG GGGCAGAACTATCGGCGGCCGCCACGGCAGTGCCCTCGCTGCCCGATGCCGACGGCGCCGCCGCCCAGGCGTGCGTCGCG AACGGCGGCCCGCCGGGCCGGCCGGCGATCGGCCTGGTGCTGTCGGGCGGCGGCGCACGCGGCTATGCCCATTTGGGGGT CCTGAAGGTACTGGAGGCGCATCGCATCCCGGTCGACTGCATCGCGGCCACCAGCATGGGGGCCGTGGTCGGCGGCCTGT ACGCGAGCGGGATGGACGCCGACCAGATGGCGCGGCGGCTCTCCGCGGTGAACCTCACCGACATCGCGTTCGACGTGGTC GATCGCGCCGACCTGCCCCAGAAGCGCCGCGAGGACGAGGAGCACTACGTCGCCGGCCTGACCGTGGGCTTCGGCCGGAA AGGCTTCAAGGCGCCGGCCGGGCTGATCCAGGGCAACCGGCTGCAGGCGCTGCTCGCCGACTGGACCGCCTCGGTGCCCG TCAACCAGTCGTTCGACAAGCTGCCGGTGCCGTTCCGCGCGATCGCCACCGATCTCCGCAACGGCCACATGGTGGTGCTC GACCATGGCTCGCTGCCACTCGCGATCCGCGCCAGCATGGCGCTGCCGGGCCTGTTCTCGCCCACCGAGATCGCCGGCCG CACGCTGGTGGACGGCGGCCTCGTCAGCAACCTGCCGGTCAGCGCCGCGCGCCGGATGGGCGCCGACCGGGTGATCGCGG TGGACATCGGCTCGCAGCTGCGCCCGCTCGATTCGCTCGCCTCGGCCGCCGACGTGATCCAGCAGATGCTCGGCATCCTG ATCCGCCAGAACGTCGCGCAGCAGCGCGCGCAGCTGCGCCCCGACGACATACTGCTCGAGCCCGATCTCGGCTCGCTGTC GTTCATCGATTTCCAGAACGCCGAGCAGGCGATCAAGGCCGGCGAGGCGGCGGCCAATGCCGCGCTGCCGCGGCTCGAAC GCTACGCGCTGTCGCCGGCCGACTACGCGGCCTACCGCGCCGCGCACGCGCGCCCGTCGGCGCCGCCGGTGCGGCTCGCC GCGATCGAGATCCGCGCGAGCGGCCCGGTGCCCAAGCGCGTGGTGGCCGACGCGCTGCACGTGAAGCCCGGCGACGTCTA CGACGCGCAGGCCGTCAACCGCGACCTGCTCGCGCTGTCGACGAGCGGCAACTTCGATTCGGTCACCCAGCAGGTGATCA CCGACGGCAACCGGAACACGCTGCTGATCGACGCGCGCGAGAAGAACTGGGGGCCGAACTTCCTGCTGTTCGGGCTCGGC ATGTCGAGCAGCTCCAGCGACGAGGGCGGCTTCCGCTTCCACGTCGGCTACCGGCGGCCCTGGCTGACCGATTCCGGGCT CGAATTCCGCGCCGACACCACGCTCGGCAGCGACCTGCAGGCGCTGCACACCGAGCTGCGCCAGCCGCTGTCGGGCCGCT ACGGCTTCTATCTCGCGCCCTACGCGGAGCTGGAGCGGCGCTTCGCGAACATCTACTACGAAGACTACAAGCTCACCCAG TACCGGTTGCAGACGCAGCGGCTCGGCCTCGACCTGGGCCTGCCGATCGCGCGCCTGGGCGACTTACGGGTGGGTCTCGC CTACGCGCACGGCAACGCCTCGGCCATCTACAACCTGCCCGACATCACGCCCGACGGCGACCTGGACGGCCAGATGTACC CGTCATTCAACGGCCATGAACTCACCGCGCGCGCGCGGCTGCTGATCGACCAGCTCGACGATCCGATGCTGCCGCGCCGC GGCTACTACCTGGAAATGCGCGTCGACCGCTCGCTCGCCGCGAGCGACGGCAGCCGCTACACCCGACTGTTCGGCAAGGC CATGATCGCGCAGGCGTTCGGCCGGCACAGCCTCAGCGCGAGCATCGAGGGCGGCAGGAGCCTGGGCGGCGTGAGCCCGG TGAACCTGCTCGCGTTCACGCTGGGCGGCTTCCAGCACCTGGCGGCCTACGCGGCCGACCAGCTGAGCGGCGACGCGCTC GCCTACGGCCAGATCACCTACATGAACCGGCTGATGACGTTCAACGCGTCGCCGATCAAGGCGTTCTACGTGGGCGCGAG CGCCGAGGTCGGCAACGTCTGGACCGCCGACGATGCGCTCGACAACGGACCGCTCAAGCAGAGCTACTCGCTGTTCGCGA GCTTCGCCACCTCGTTCGGGCCGGTCTACGTAGGTGTCGCGCTGGCGCCGGGCGGGGTGCGCAACCTGTACTTCCAGCTC GGCCGGACCTATTGA
Upstream 100 bases:
>100_bases ACCGTCGGGACTGCCTGAGATCGGCCGCATAAATTGACGGCCGCCGCAAAGCCTGTACCCTCTCGCCTGGGCCGCGCATT CGCCGCCGTGCAACCACGTC
Downstream 100 bases:
>100_bases GCGCCGCTCGGGCACGGACGGCGCGCGGGCCGCAACCCGGCCGAGGCGGCGCGGCGGCCGGCGGGCCTCAGCCCGGCCAG CCGATCTCGAAACGCGCGCC
Product: putative patatin-like phospholipase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 884; Mature: 883
Protein sequence:
>884_residues MSIPIVEIRILTFPASHRESPADRLVARAPRPAAGPDAADRRLGRDRRTGPRNACLARLALAMLGWACCVLPATARADTS DRPAAQAAQAAQAAQAAPAAPAAAADSTTWAAALAAMQAQRNPSDEGRGVQKMGAELSAAATAVPSLPDADGAAAQACVA NGGPPGRPAIGLVLSGGGARGYAHLGVLKVLEAHRIPVDCIAATSMGAVVGGLYASGMDADQMARRLSAVNLTDIAFDVV DRADLPQKRREDEEHYVAGLTVGFGRKGFKAPAGLIQGNRLQALLADWTASVPVNQSFDKLPVPFRAIATDLRNGHMVVL DHGSLPLAIRASMALPGLFSPTEIAGRTLVDGGLVSNLPVSAARRMGADRVIAVDIGSQLRPLDSLASAADVIQQMLGIL IRQNVAQQRAQLRPDDILLEPDLGSLSFIDFQNAEQAIKAGEAAANAALPRLERYALSPADYAAYRAAHARPSAPPVRLA AIEIRASGPVPKRVVADALHVKPGDVYDAQAVNRDLLALSTSGNFDSVTQQVITDGNRNTLLIDAREKNWGPNFLLFGLG MSSSSSDEGGFRFHVGYRRPWLTDSGLEFRADTTLGSDLQALHTELRQPLSGRYGFYLAPYAELERRFANIYYEDYKLTQ YRLQTQRLGLDLGLPIARLGDLRVGLAYAHGNASAIYNLPDITPDGDLDGQMYPSFNGHELTARARLLIDQLDDPMLPRR GYYLEMRVDRSLAASDGSRYTRLFGKAMIAQAFGRHSLSASIEGGRSLGGVSPVNLLAFTLGGFQHLAAYAADQLSGDAL AYGQITYMNRLMTFNASPIKAFYVGASAEVGNVWTADDALDNGPLKQSYSLFASFATSFGPVYVGVALAPGGVRNLYFQL GRTY
Sequences:
>Translated_884_residues MSIPIVEIRILTFPASHRESPADRLVARAPRPAAGPDAADRRLGRDRRTGPRNACLARLALAMLGWACCVLPATARADTS DRPAAQAAQAAQAAQAAPAAPAAAADSTTWAAALAAMQAQRNPSDEGRGVQKMGAELSAAATAVPSLPDADGAAAQACVA NGGPPGRPAIGLVLSGGGARGYAHLGVLKVLEAHRIPVDCIAATSMGAVVGGLYASGMDADQMARRLSAVNLTDIAFDVV DRADLPQKRREDEEHYVAGLTVGFGRKGFKAPAGLIQGNRLQALLADWTASVPVNQSFDKLPVPFRAIATDLRNGHMVVL DHGSLPLAIRASMALPGLFSPTEIAGRTLVDGGLVSNLPVSAARRMGADRVIAVDIGSQLRPLDSLASAADVIQQMLGIL IRQNVAQQRAQLRPDDILLEPDLGSLSFIDFQNAEQAIKAGEAAANAALPRLERYALSPADYAAYRAAHARPSAPPVRLA AIEIRASGPVPKRVVADALHVKPGDVYDAQAVNRDLLALSTSGNFDSVTQQVITDGNRNTLLIDAREKNWGPNFLLFGLG MSSSSSDEGGFRFHVGYRRPWLTDSGLEFRADTTLGSDLQALHTELRQPLSGRYGFYLAPYAELERRFANIYYEDYKLTQ YRLQTQRLGLDLGLPIARLGDLRVGLAYAHGNASAIYNLPDITPDGDLDGQMYPSFNGHELTARARLLIDQLDDPMLPRR GYYLEMRVDRSLAASDGSRYTRLFGKAMIAQAFGRHSLSASIEGGRSLGGVSPVNLLAFTLGGFQHLAAYAADQLSGDAL AYGQITYMNRLMTFNASPIKAFYVGASAEVGNVWTADDALDNGPLKQSYSLFASFATSFGPVYVGVALAPGGVRNLYFQL GRTY >Mature_883_residues SIPIVEIRILTFPASHRESPADRLVARAPRPAAGPDAADRRLGRDRRTGPRNACLARLALAMLGWACCVLPATARADTSD RPAAQAAQAAQAAQAAPAAPAAAADSTTWAAALAAMQAQRNPSDEGRGVQKMGAELSAAATAVPSLPDADGAAAQACVAN GGPPGRPAIGLVLSGGGARGYAHLGVLKVLEAHRIPVDCIAATSMGAVVGGLYASGMDADQMARRLSAVNLTDIAFDVVD RADLPQKRREDEEHYVAGLTVGFGRKGFKAPAGLIQGNRLQALLADWTASVPVNQSFDKLPVPFRAIATDLRNGHMVVLD HGSLPLAIRASMALPGLFSPTEIAGRTLVDGGLVSNLPVSAARRMGADRVIAVDIGSQLRPLDSLASAADVIQQMLGILI RQNVAQQRAQLRPDDILLEPDLGSLSFIDFQNAEQAIKAGEAAANAALPRLERYALSPADYAAYRAAHARPSAPPVRLAA IEIRASGPVPKRVVADALHVKPGDVYDAQAVNRDLLALSTSGNFDSVTQQVITDGNRNTLLIDAREKNWGPNFLLFGLGM SSSSSDEGGFRFHVGYRRPWLTDSGLEFRADTTLGSDLQALHTELRQPLSGRYGFYLAPYAELERRFANIYYEDYKLTQY RLQTQRLGLDLGLPIARLGDLRVGLAYAHGNASAIYNLPDITPDGDLDGQMYPSFNGHELTARARLLIDQLDDPMLPRRG YYLEMRVDRSLAASDGSRYTRLFGKAMIAQAFGRHSLSASIEGGRSLGGVSPVNLLAFTLGGFQHLAAYAADQLSGDALA YGQITYMNRLMTFNASPIKAFYVGASAEVGNVWTADDALDNGPLKQSYSLFASFATSFGPVYVGVALAPGGVRNLYFQLG RTY
Specific function: Unknown
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 patatin domain [H]
Homologues:
Organism=Escherichia coli, GI226510936, Length=323, Percent_Identity=29.1021671826625, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6323581, Length=305, Percent_Identity=29.1803278688525, Blast_Score=104, Evalue=7e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016035 - InterPro: IPR001423 - InterPro: IPR002641 [H]
Pfam domain/function: PF01734 Patatin [H]
EC number: NA
Molecular weight: Translated: 94031; Mature: 93900
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPIVEIRILTFPASHRESPADRLVARAPRPAAGPDAADRRLGRDRRTGPRNACLARLA CCCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHH LAMLGWACCVLPATARADTSDRPAAQAAQAAQAAQAAPAAPAAAADSTTWAAALAAMQAQ HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH RNPSDEGRGVQKMGAELSAAATAVPSLPDADGAAAQACVANGGPPGRPAIGLVLSGGGAR CCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC GYAHLGVLKVLEAHRIPVDCIAATSMGAVVGGLYASGMDADQMARRLSAVNLTDIAFDVV CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH DRADLPQKRREDEEHYVAGLTVGFGRKGFKAPAGLIQGNRLQALLADWTASVPVNQSFDK HCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC LPVPFRAIATDLRNGHMVVLDHGSLPLAIRASMALPGLFSPTEIAGRTLVDGGLVSNLPV CCCCHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHCCCEEECCCCCCCCCH SAARRMGADRVIAVDIGSQLRPLDSLASAADVIQQMLGILIRQNVAQQRAQLRPDDILLE HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC PDLGSLSFIDFQNAEQAIKAGEAAANAALPRLERYALSPADYAAYRAAHARPSAPPVRLA CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEE AIEIRASGPVPKRVVADALHVKPGDVYDAQAVNRDLLALSTSGNFDSVTQQVITDGNRNT EEEEEECCCCCHHHHHHHHCCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCE LLIDAREKNWGPNFLLFGLGMSSSSSDEGGFRFHVGYRRPWLTDSGLEFRADTTLGSDLQ EEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCHHH ALHTELRQPLSGRYGFYLAPYAELERRFANIYYEDYKLTQYRLQTQRLGLDLGLPIARLG HHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCEEHHHHHHHHHHCCCCCCCCHHHHC DLRVGLAYAHGNASAIYNLPDITPDGDLDGQMYPSFNGHELTARARLLIDQLDDPMLPRR CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC GYYLEMRVDRSLAASDGSRYTRLFGKAMIAQAFGRHSLSASIEGGRSLGGVSPVNLLAFT CEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHH LGGFQHLAAYAADQLSGDALAYGQITYMNRLMTFNASPIKAFYVGASAEVGNVWTADDAL HHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCCCC DNGPLKQSYSLFASFATSFGPVYVGVALAPGGVRNLYFQLGRTY CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCC >Mature Secondary Structure SIPIVEIRILTFPASHRESPADRLVARAPRPAAGPDAADRRLGRDRRTGPRNACLARLA CCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHH LAMLGWACCVLPATARADTSDRPAAQAAQAAQAAQAAPAAPAAAADSTTWAAALAAMQAQ HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH RNPSDEGRGVQKMGAELSAAATAVPSLPDADGAAAQACVANGGPPGRPAIGLVLSGGGAR CCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC GYAHLGVLKVLEAHRIPVDCIAATSMGAVVGGLYASGMDADQMARRLSAVNLTDIAFDVV CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH DRADLPQKRREDEEHYVAGLTVGFGRKGFKAPAGLIQGNRLQALLADWTASVPVNQSFDK HCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC LPVPFRAIATDLRNGHMVVLDHGSLPLAIRASMALPGLFSPTEIAGRTLVDGGLVSNLPV CCCCHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHCCCEEECCCCCCCCCH SAARRMGADRVIAVDIGSQLRPLDSLASAADVIQQMLGILIRQNVAQQRAQLRPDDILLE HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC PDLGSLSFIDFQNAEQAIKAGEAAANAALPRLERYALSPADYAAYRAAHARPSAPPVRLA CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEE AIEIRASGPVPKRVVADALHVKPGDVYDAQAVNRDLLALSTSGNFDSVTQQVITDGNRNT EEEEEECCCCCHHHHHHHHCCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCE LLIDAREKNWGPNFLLFGLGMSSSSSDEGGFRFHVGYRRPWLTDSGLEFRADTTLGSDLQ EEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCHHH ALHTELRQPLSGRYGFYLAPYAELERRFANIYYEDYKLTQYRLQTQRLGLDLGLPIARLG HHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCEEHHHHHHHHHHCCCCCCCCHHHHC DLRVGLAYAHGNASAIYNLPDITPDGDLDGQMYPSFNGHELTARARLLIDQLDDPMLPRR CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC GYYLEMRVDRSLAASDGSRYTRLFGKAMIAQAFGRHSLSASIEGGRSLGGVSPVNLLAFT CEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHH LGGFQHLAAYAADQLSGDALAYGQITYMNRLMTFNASPIKAFYVGASAEVGNVWTADDAL HHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCCCC DNGPLKQSYSLFASFATSFGPVYVGVALAPGGVRNLYFQLGRTY CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]