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The map label for this gene is yhjC [C]

Identifier: 238025089

GI number: 238025089

Start: 2190188

End: 2191096

Strand: Direct

Name: yhjC [C]

Synonym: bglu_2g17450

Alternate gene names: 238025089

Gene position: 2190188-2191096 (Clockwise)

Preceding gene: 238025087

Following gene: 238025090

Centisome position: 77.46

GC content: 71.4

Gene sequence:

>909_bases
ATGCAACTCGACGATCTCCGCATCTTCATCGCGACGGTGGAAGCCGGCAGCTTCACCGGCGCGGCCGACAAGCTGCTGCT
GTCCAAGCAGTTCGTCAGCCGGCGCATGGCCGCGCTCGAGGCGGCGCTGCGCGTACGCCTGCTCAACCGCAACACGCGCA
AGCTGGCCGTGACCGAATCGGGGCAGACGTTCTACACGCACGCGCAGCGGATCCTCGCCGAGGTCGCGCAGGCCGAGGAG
GCGATGTCGGCGCGCCATACCGAGTTGCACGGCTCGCTGAAGATCAGCGCGCCGATGTCGTTCGGCATCAGTCACCTCTC
GCCGCTGATCGCCGAATTCCTGGCCGCGCATCCGGCCGTGCGGCTCGACGTCGAGCTGAGCGACCGGCGCGTGGATTTGA
TTGGCGAGGGCTTCGATCTCGCGCTGCGAATCGGCGCGCTGGCCGATTCCACGCTGGTGGCGCGCACGCTCGGCACGCTG
CGCATGATCGCCTGCTGCAGCCCCGCCTACCGCCGCCTGCACGGCGAGCCGGCCACCCCGGCCGACCTGCACGGCCACGC
ATGCCTGCTGTACGGACAGGAGCTGCGCGACGGCTGGGAGTTCGACACCGCCGACGGGCGGCGCGCCTATGACGTGCAGG
GGCCGCTCCTGGCCAACAACGGCGACGTGGTGCGCGACGCGGCGATCGCCGGGCTCGGCATCGCGCTGCTGCCGCAGTTC
ATCGTCGGCCCGGCGCTCGCGCGCGGCGAGCTGGTGGCGATCCTCGGCGCGCATGCAAGCCCGCCGCTACGGCTCAGCGC
CGTCTACCCGCAGCACCGGCAGGGCTCGACCGCGATCCGCACGCTGCTCGCGTTCCTCGAGACGCGCCTGGCCGACGCGC
TCGGCGCACGGCCCGATGCGCAGCATTGA

Upstream 100 bases:

>100_bases
ACGATGACAGGGCGTTGCTCGATGGGATGCATCTTAAGTCAACCAACTTGATGAATAAATCGCGCATGAGATAATCATTG
TCCTATTTTGGTGGACAATC

Downstream 100 bases:

>100_bases
GCGGCGCCCACCCAACCGGCGGCGTATGCCGCGCGCGAAATCGCCATCGCGCGCTTGCAACATCGCATGAGCCTCTCTAT
AATTCGCGCCTCACGCAGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQLDDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTESGQTFYTHAQRILAEVAQAEE
AMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAVRLDVELSDRRVDLIGEGFDLALRIGALADSTLVARTLGTL
RMIACCSPAYRRLHGEPATPADLHGHACLLYGQELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLPQF
IVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFLETRLADALGARPDAQH

Sequences:

>Translated_302_residues
MQLDDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTESGQTFYTHAQRILAEVAQAEE
AMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAVRLDVELSDRRVDLIGEGFDLALRIGALADSTLVARTLGTL
RMIACCSPAYRRLHGEPATPADLHGHACLLYGQELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLPQF
IVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFLETRLADALGARPDAQH
>Mature_302_residues
MQLDDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTESGQTFYTHAQRILAEVAQAEE
AMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAVRLDVELSDRRVDLIGEGFDLALRIGALADSTLVARTLGTL
RMIACCSPAYRRLHGEPATPADLHGHACLLYGQELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLPQF
IVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFLETRLADALGARPDAQH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=35.2739726027397, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=36.6101694915254, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=35.3741496598639, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=32.3232323232323, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1789639, Length=272, Percent_Identity=32.7205882352941, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=25.2559726962457, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=30.7086614173228, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=25.3424657534247, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788706, Length=265, Percent_Identity=28.6792452830189, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=25.8620689655172, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=136, Percent_Identity=28.6764705882353, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32515; Mature: 32515

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTES
CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GQTFYTHAQRILAEVAQAEEAMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCHHHHHHHHHHHHHCCCCE
RLDVELSDRRVDLIGEGFDLALRIGALADSTLVARTLGTLRMIACCSPAYRRLHGEPATP
EEEEEECCCEEEEECCCCEEEEEECHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
ADLHGHACLLYGQELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLPQF
CCCCCCEEEEECHHHCCCCCCCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHH
IVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFLETRLADALGARPDA
HHCCHHCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
QH
CC
>Mature Secondary Structure
MQLDDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTES
CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GQTFYTHAQRILAEVAQAEEAMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCHHHHHHHHHHHHHCCCCE
RLDVELSDRRVDLIGEGFDLALRIGALADSTLVARTLGTLRMIACCSPAYRRLHGEPATP
EEEEEECCCEEEEECCCCEEEEEECHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
ADLHGHACLLYGQELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLPQF
CCCCCCEEEEECHHHCCCCCCCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHH
IVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFLETRLADALGARPDA
HHCCHHCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
QH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]