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The map label for this gene is yhjC [H]

Identifier: 238024793

GI number: 238024793

Start: 1830420

End: 1831364

Strand: Reverse

Name: yhjC [H]

Synonym: bglu_2g14310

Alternate gene names: 238024793

Gene position: 1831364-1830420 (Counterclockwise)

Preceding gene: 238024800

Following gene: 238024792

Centisome position: 64.77

GC content: 67.3

Gene sequence:

>945_bases
ATGCAGGTGTTTACGCGCGTGGTCGATGCCAACAGCTTCACGCGGGCCGCGGAGACGCTGTCGATGCCGCGCGCGTCGGT
CACCACCATCATTCAGAACCTCGAGGCCCTGCTCGGCGTGCGGCTGTTGCACCGCACCACGCGCCGCCTCTCGCTGACAC
CCGAGGGCGCGGGGTATTACGAGCATTGCATTCGGATCATGACGGAGATCTCGGAGGCCGATGCGAGTTTCCAGGCCGGC
AATCGCAAGCCGCACGGCACGCTGCGCGTGCATCTGCCGTCGCTGCTCGGCCGGCGCGTGCTGTTGCCGGCGCTGGCGCT
GTTCCATCAGCGCTATCCGGACATCGAACTGCACTTCGGGCTCTCGGACCGGCCCGTCGATCTGGTGCGCGACGGCTTCG
ACTGCGAGATCCGGGTCGGGCCGCTCGCGGACTCGTCGATGGTGGCGCGGCGGGTGGGCGTGATCAAGCGCATCAGCTGC
GCCTCGCCCGACTACCTCGAGCGCTACGGCCGGCCGGCATCGATCGAGGCGCTGGAGCAGCACCGCGCCGTGAATTTCGC
CTATACGAGCGGCGGCCGGCCGATGCCTTGGACCTTCCTGATCGACGGCAAGCTGCACGAGGTGCGGATGAACTCGGTGG
TCACCGTCAATGATTCGGATGCCTACGTGACCTGCGCGCTGGAAGGCTTCGGCATGATCCAGCCAATGCTGTTCTCGGTG
ATTCCACATCTGCTCGACGGCTCGCTGGTGGAGGTGCTGCCGGGCGTCTACCCGAAGCCCAAGCCGATCTCGATCGTCTA
TCCGCACAGCCGCCATCTGTCGATGACGGTGCGCGTGTTCGCGGACTGGGTGGCCGAATTGTTCGCGTCGGTGCCGGCGC
TCGAGAGCATGCCCGGCAAGGGCGCGTCGGCGGCCAGCAAGGAGCGCGGCGCGGTGGCGGCCTGA

Upstream 100 bases:

>100_bases
TCGCGGCCGCCCTTGAGCCGCGACGCCGTGCGGCTCTATCCTGCTCCGTTGCTCGTTCGAAAGCAGAAACAGGGGGTAAG
TCATGGACCGTTTACAGGCA

Downstream 100 bases:

>100_bases
GGCCGTCGCCGGAAAAGGCTGCGGCGGGCGGCCCTGCTGCTTCCTCCTCGCCGCGCCGCCTGCTTGCGGGGATCGCGCTG
CACTACAATCTGGCGCGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYYEHCIRIMTEISEADASFQAG
NRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFGLSDRPVDLVRDGFDCEIRVGPLADSSMVARRVGVIKRISC
ASPDYLERYGRPASIEALEQHRAVNFAYTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPMLFSV
IPHLLDGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWVAELFASVPALESMPGKGASAASKERGAVAA

Sequences:

>Translated_314_residues
MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYYEHCIRIMTEISEADASFQAG
NRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFGLSDRPVDLVRDGFDCEIRVGPLADSSMVARRVGVIKRISC
ASPDYLERYGRPASIEALEQHRAVNFAYTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPMLFSV
IPHLLDGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWVAELFASVPALESMPGKGASAASKERGAVAA
>Mature_314_residues
MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYYEHCIRIMTEISEADASFQAG
NRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFGLSDRPVDLVRDGFDCEIRVGPLADSSMVARRVGVIKRISC
ASPDYLERYGRPASIEALEQHRAVNFAYTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPMLFSV
IPHLLDGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWVAELFASVPALESMPGKGASAASKERGAVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=40, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=33.4470989761092, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=31.9444444444444, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=31.9078947368421, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=31.0104529616725, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.6338028169014, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=30.7167235494881, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789173, Length=139, Percent_Identity=37.410071942446, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786448, Length=286, Percent_Identity=24.8251748251748, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=23.5294117647059, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34602; Mature: 34602

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY
CCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH
EHCIRIMTEISEADASFQAGNRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFG
HHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEC
LSDRPVDLVRDGFDCEIRVGPLADSSMVARRVGVIKRISCASPDYLERYGRPASIEALEQ
CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHH
HRAVNFAYTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPMLFSV
CCCEEEEEECCCCCCCEEEEECCEEEEEEECEEEEECCCCCEEEEEECCCCHHHHHHHHH
IPHLLDGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWVAELFASVPALESMPGK
HHHHHCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCC
GASAASKERGAVAA
CCCCCCCCCCCCCC
>Mature Secondary Structure
MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY
CCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH
EHCIRIMTEISEADASFQAGNRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFG
HHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEC
LSDRPVDLVRDGFDCEIRVGPLADSSMVARRVGVIKRISCASPDYLERYGRPASIEALEQ
CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHH
HRAVNFAYTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPMLFSV
CCCEEEEEECCCCCCCEEEEECCEEEEEEECEEEEECCCCCEEEEEECCCCHHHHHHHHH
IPHLLDGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWVAELFASVPALESMPGK
HHHHHCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCC
GASAASKERGAVAA
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]