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The map label for this gene is ydcR [H]

Identifier: 238024750

GI number: 238024750

Start: 1775919

End: 1777421

Strand: Reverse

Name: ydcR [H]

Synonym: bglu_2g13870

Alternate gene names: 238024750

Gene position: 1777421-1775919 (Counterclockwise)

Preceding gene: 238024754

Following gene: 238024749

Centisome position: 62.87

GC content: 70.79

Gene sequence:

>1503_bases
ATGACGCGCTATGAGAAGCTGGCCGACGAGATCGACGGGATGATCCGGCGCGGCGTGTACCGGCCCGGCGATCGCGTGCC
CTCGGTGCGGCAGGCGGCGCGCCAGCACGACCTCAGCATCACCACCGTGGTGCGCGCCTACCTCGTGCTGGAGAGCCGCG
GCGCGATCGAGAGCCGGCCGCAGTCGGGCTACTTCGTGCGCGCGCGCGGGGCCGCCGGCGAGCCGATGCTCGACGCGAGC
ACGCCGATCGCGGTGTCGTCCACGGTGGACGTGAGCCGGCTGGTGCTGTCCACGCTGCGCAGCATCGCGCGCGACGACGC
GGTGCCGCTGGGCTCGCCGTATCCCGATTCGGCGCTGTTCCCCTCGCAGCGGATCGCGCGCCACATGCACGCGATCGCGC
GCGGGCGCACGCGCTGGGGCGTGGTGGACGACCTGCCGCCCGGCAACCCCGAGCTGATCCGGCAGATCGCGCGGCGCTAC
GGCGAGCGCGGCGTCGCCGTCGATCCGAACGAGATCGTCGTGACGATCGGCGCGACCGAGGCGATCAACCTGTGCCTGCA
GGCAGTGGCGCGGCCCGGCGACACGATCGCGGTCGAATCGCCGACCTTCTACGCGATGCTGCACGCCATCGAGCGGCTCG
GCATGCGTGCGATCGAGGTGGCCACGCATCCGGTGGACGGCATCGACCTCGATGCGCTGGCGCGGATCCTCGAACGCGAG
CCGATCGCCGCCTGCATGGTGATGCCGAACTTCCAGAACCCGCTCGGCTTTTGCATGAGCGACGCGCGCAAGGCCGCGCT
CGTCGCGCTGCTCGAACGCCACGACGTGCCGGCCATCGAGAACGACGTCTACCACGAACTGCACCACGGCGAGGTGCGCC
CGAGCGCGCTGAAGTCGTTCGACCGGCGCGGGCTGGTGCTGCACTGCGCGTCGTTCTCGAAAAGCCTGTCGCCGGCCTTC
CGGATCGGCTGGGCGATGCCGGGCCGCTACCGCGATCAGGTCGAGAAGCTCAAGTTCCTGAACACGCTCGGCACGCCCGC
GCTCGACCAGCTCGCGATCGCGGAATACCTCGGCCACGACGGCTACGACCATCACCTGCGGCGCATCCGCAAGACCTTCG
CGCAGCAGGCCAGCCTGATGGCCGCGATGGTGCGGCGCTTCTTTCCCGAGGGCACGCGCCTGTCGCAGCCCGCGGGCGGC
TACGTGCTGTGGGTGGAACTGCCGCCCGCCTGCGATGCGATCGCGCTGTACCGGCTCGCGCTGGCCGAGCGGATCACCAT
CGGGCCGGGGCACATGTTCTCGACCACCGGCAACTACCAGCACTGCATCCGGCTCAACTACAGTTATCCGTGGTCGCCGC
AGATCGAGGACGCGCTGCGCCGGCTCGGACGGCTGGTGGCCCGCGTCGCGCACGGCGGCGGGCATGACGGGCATGGCAAG
GACGAGGGCAAGGGCGGCACCAAGCCGCGCAAGCGAGTGACGAACCGGCAGGAGACGCGATGA

Upstream 100 bases:

>100_bases
CATGGGTACACACCTGATCCATCGCAAAAAGAGTACAGTTTCGTTTTCAGAACGCTTGATGGCTGTCAACTGTGCTCCCT
ATCTTGCTGAAAGGCGCTGT

Downstream 100 bases:

>100_bases
CGAACCGACCGCATGACGCGAGGCCCGATGCGCCGCGCGACCACGACGCCGACGACGCCGACGACGCCGACGACGAGGGC
GGGCTCGATCCGACCGTCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MTRYEKLADEIDGMIRRGVYRPGDRVPSVRQAARQHDLSITTVVRAYLVLESRGAIESRPQSGYFVRARGAAGEPMLDAS
TPIAVSSTVDVSRLVLSTLRSIARDDAVPLGSPYPDSALFPSQRIARHMHAIARGRTRWGVVDDLPPGNPELIRQIARRY
GERGVAVDPNEIVVTIGATEAINLCLQAVARPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPVDGIDLDALARILERE
PIAACMVMPNFQNPLGFCMSDARKAALVALLERHDVPAIENDVYHELHHGEVRPSALKSFDRRGLVLHCASFSKSLSPAF
RIGWAMPGRYRDQVEKLKFLNTLGTPALDQLAIAEYLGHDGYDHHLRRIRKTFAQQASLMAAMVRRFFPEGTRLSQPAGG
YVLWVELPPACDAIALYRLALAERITIGPGHMFSTTGNYQHCIRLNYSYPWSPQIEDALRRLGRLVARVAHGGGHDGHGK
DEGKGGTKPRKRVTNRQETR

Sequences:

>Translated_500_residues
MTRYEKLADEIDGMIRRGVYRPGDRVPSVRQAARQHDLSITTVVRAYLVLESRGAIESRPQSGYFVRARGAAGEPMLDAS
TPIAVSSTVDVSRLVLSTLRSIARDDAVPLGSPYPDSALFPSQRIARHMHAIARGRTRWGVVDDLPPGNPELIRQIARRY
GERGVAVDPNEIVVTIGATEAINLCLQAVARPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPVDGIDLDALARILERE
PIAACMVMPNFQNPLGFCMSDARKAALVALLERHDVPAIENDVYHELHHGEVRPSALKSFDRRGLVLHCASFSKSLSPAF
RIGWAMPGRYRDQVEKLKFLNTLGTPALDQLAIAEYLGHDGYDHHLRRIRKTFAQQASLMAAMVRRFFPEGTRLSQPAGG
YVLWVELPPACDAIALYRLALAERITIGPGHMFSTTGNYQHCIRLNYSYPWSPQIEDALRRLGRLVARVAHGGGHDGHGK
DEGKGGTKPRKRVTNRQETR
>Mature_499_residues
TRYEKLADEIDGMIRRGVYRPGDRVPSVRQAARQHDLSITTVVRAYLVLESRGAIESRPQSGYFVRARGAAGEPMLDAST
PIAVSSTVDVSRLVLSTLRSIARDDAVPLGSPYPDSALFPSQRIARHMHAIARGRTRWGVVDDLPPGNPELIRQIARRYG
ERGVAVDPNEIVVTIGATEAINLCLQAVARPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPVDGIDLDALARILEREP
IAACMVMPNFQNPLGFCMSDARKAALVALLERHDVPAIENDVYHELHHGEVRPSALKSFDRRGLVLHCASFSKSLSPAFR
IGWAMPGRYRDQVEKLKFLNTLGTPALDQLAIAEYLGHDGYDHHLRRIRKTFAQQASLMAAMVRRFFPEGTRLSQPAGGY
VLWVELPPACDAIALYRLALAERITIGPGHMFSTTGNYQHCIRLNYSYPWSPQIEDALRRLGRLVARVAHGGGHDGHGKD
EGKGGTKPRKRVTNRQETR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=313, Percent_Identity=25.5591054313099, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI33469970, Length=313, Percent_Identity=25.5591054313099, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI4507369, Length=182, Percent_Identity=25.8241758241758, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=41.6666666666667, Blast_Score=393, Evalue=1e-110,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=35.8208955223881, Blast_Score=318, Evalue=4e-88,
Organism=Escherichia coli, GI1788722, Length=302, Percent_Identity=25.1655629139073, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321000, Length=315, Percent_Identity=23.4920634920635, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356535, Length=386, Percent_Identity=24.6113989637306, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI18859735, Length=201, Percent_Identity=25.8706467661692, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 55356; Mature: 55225

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYEKLADEIDGMIRRGVYRPGDRVPSVRQAARQHDLSITTVVRAYLVLESRGAIESRP
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
QSGYFVRARGAAGEPMLDASTPIAVSSTVDVSRLVLSTLRSIARDDAVPLGSPYPDSALF
CCCCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PSQRIARHMHAIARGRTRWGVVDDLPPGNPELIRQIARRYGERGVAVDPNEIVVTIGATE
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEECCHH
AINLCLQAVARPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPVDGIDLDALARILERE
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHCCC
PIAACMVMPNFQNPLGFCMSDARKAALVALLERHDVPAIENDVYHELHHGEVRPSALKSF
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
DRRGLVLHCASFSKSLSPAFRIGWAMPGRYRDQVEKLKFLNTLGTPALDQLAIAEYLGHD
CCCCEEEEECHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
GYDHHLRRIRKTFAQQASLMAAMVRRFFPEGTRLSQPAGGYVLWVELPPACDAIALYRLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
LAERITIGPGHMFSTTGNYQHCIRLNYSYPWSPQIEDALRRLGRLVARVAHGGGHDGHGK
HHHHHCCCCCCEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
DEGKGGTKPRKRVTNRQETR
CCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TRYEKLADEIDGMIRRGVYRPGDRVPSVRQAARQHDLSITTVVRAYLVLESRGAIESRP
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
QSGYFVRARGAAGEPMLDASTPIAVSSTVDVSRLVLSTLRSIARDDAVPLGSPYPDSALF
CCCCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PSQRIARHMHAIARGRTRWGVVDDLPPGNPELIRQIARRYGERGVAVDPNEIVVTIGATE
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEECCHH
AINLCLQAVARPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPVDGIDLDALARILERE
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHCCC
PIAACMVMPNFQNPLGFCMSDARKAALVALLERHDVPAIENDVYHELHHGEVRPSALKSF
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
DRRGLVLHCASFSKSLSPAFRIGWAMPGRYRDQVEKLKFLNTLGTPALDQLAIAEYLGHD
CCCCEEEEECHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
GYDHHLRRIRKTFAQQASLMAAMVRRFFPEGTRLSQPAGGYVLWVELPPACDAIALYRLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
LAERITIGPGHMFSTTGNYQHCIRLNYSYPWSPQIEDALRRLGRLVARVAHGGGHDGHGK
HHHHHCCCCCCEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
DEGKGGTKPRKRVTNRQETR
CCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]