| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024500
Identifier: 238024500
GI number: 238024500
Start: 1409841
End: 1412201
Strand: Reverse
Name: 238024500
Synonym: bglu_2g11030
Alternate gene names: NA
Gene position: 1412201-1409841 (Counterclockwise)
Preceding gene: 238024501
Following gene: 238024499
Centisome position: 49.95
GC content: 62.43
Gene sequence:
>2361_bases ATGTCGTCGATCCTGCCTACCCAGGCCTACGAGTTGAAGCTCGCACCGCATCCGGCGCCGTTCTCGGTGCTCGAGTTCAG CGGCCGGGACGCCGTGAGCGAGCTGTATCACTACGACATCGAGTTCACCAGCCCGGCAGCGGGCATCCCGATGGAGCAGG TGGTCGGCCGGCCCGCGAGATTCACCATCGCTCCGATTGACCCGAACATGGGCTACCTGCGCAAGATGTTCGGTGAGAAC GCGGAGCAGTTCAGCAAGATGCCGCCCGCGCACACCATCCACGGCATCATCACGGAATTCGATGAATTCGCCACGACGGC CGACCAGACGCACTACCGGGTGCGGCTCGAGCCGGTGCTCGCCGACCTGCACCGGGGCGTGACGAGCCGGCTGTTCCAGA AGCAGTCGATCGAGGAAATCGTGACCGACACGCTGCGCCATTACGGCTACCGCGTCGGCGTCGACTTCGTGTTCCAACTG CGCCACCAGTACAAGCGGCACGAATACGTGACGCAGTACCACGAGACCACGTTTGCCTTCATCCAGCGCCTCTGTGCGCA GGAGGGCATCTGGTTCCGCTGGGAGCAGAAGAAGGATCACGCGGTGATCGTGTTCGGCGACGATCTCGATGCCTATGCAC GCAAACAGCGCACGGTGCCTTACCTGCGAGACGCCGGACTCGAGAGCTCAGGCGCGGACACGATCAAGACGCTAGAAAAG CGGACCCGGCGCGTACCCGAAGCCGTGCGGTTGCACGACTACAACCATCGCGAGGCGGGCGTATCGCTGCTCGTCGAGGA AAACGCCGCGCGTGCCGACAAGTCGACGAACGGTGTCGACTACCGCTGGGGCGAGCATTACGAAACGCCGGAGGAGGGCA GGCAGATCGCCCGCCGGCGCCATGAGGCGTATCTGGCGAACCAGATCACCTTCAAGGGCACCGGCAATCCGTTCTGGCTG GAGGCGGGCGAAGTCATGCGTGTCGAGCCGGTCCAGGCCGACGCGAAGCACGGGATCTTCATCACCGCGGTGGAATCGAG CGGCGGCCGTAGCCAATCGTACTGGGTGAGCTTCGAGGGGATTCCGTCCGATCGCGCGTATCGAACGCCGATCGCCTCGA TCAAGCGACCGGCCATTGACGGCATCCTGCCGGCCCGCATTACATCGCCGGGCAACTACAAATACGCGTACCTGACCGAG CAGGGCTGGTACGTGATCAAGCTGCCGTTCGACCTCGACGAGTGGAGTCCGGGCGGTACGAGCCGGCCGGTGCGGTTTGC CAAGCCGTACAGCGGGGACAGCTACGGGCACCACTTCCCGCTGATCGACGGTGCGGAAGTCGCCATCGTCTTTACCGATG GCAATCCGGACCGGCCCGTGATCATCGGGGCCATGCACGACAGCCTGCATCCGGATCTTGTCAATAACCTCAATCACACC CGCAACATCGTTCGCACCGCGGCGCAGAACGAGCTGCGGATGGAGGATAAGGAAAACGTCGAGCACATCCACCTGACGAC GCCGTTCCAGACCAGTGAGCTCAATCTCGGGCACATGGTCGATGGGGACCGCAAGGAACGCGGACAAGGCGCGGAATTGC GGACTGACGAGCGTGTGGCGGTGCGTGGCGCGAAGGGTGTTTTTATTTCGGCGGATGCCCAGTACGCCGCGCGCGGCAAG CAGCTCGACATGGAGCCGGCCCAAGGACTCCTCGAACAGGCGCTACAGCAGATGCAATCGCTGGCCGGCGCGGCGAAAGC TTCTCAGGCGATCGCTGCCGATTACGAGAAGCAGAAGGCATTATTCGACAAGACCCTGAACGAACTCAGGAAGGCAGGCA TCCTCGTCAGCGCACCGGCGGGTGTTGGTCTCGTATCGGGGGACCACATGCAGTTCAGTGCCGACCAGAATCTCATTGCC ACGGCGGGAGGCAACGCTGATTTTGGGATCATCAAGCGCTTTACCGTCGCTGCCGGGGAAGCGGTTTCCGTGTTCGCCCA GAAGCTCGGCCTGAAATTCGTTGCGGCGAAGGGGAAGGTCGAAATTCACGCCCAGACGGACGAAATCGACATGGCTGCCA TGAAGGACATCACGATTTCGAGCGCCGAGGGGCGGCTCGTAATTTCGGCAGCCAAGGAGGTCTGGATCGGGGCGGGTGGC TCGTACATCAAGATCAACGCAAATCGCATCGAGAACGGTACGCCAGGCGATATTCTCGAAAAGTGCGCATCGTGGGACAA GCCGGGCGCATCTTCAATGCGTTTGCCTGCACCGGACCTGCAGTCCGGAGATATCAAGGGGTGTTCATGGCGATCGGCAG CCGCGGCGGCCGATAGTGCAGCAACCGTGGTGCTGGAGTAA
Upstream 100 bases:
>100_bases TAAGCCGCGCTGATCCGCCCAGTTCAGTGCATCAGCCGCCGGGGCCATGAAGGCTCCGGCGGTGCGGTTCGTATTTGTGC CTGCTCAACGGAGTTTCCGC
Downstream 100 bases:
>100_bases GGTGGCCATGAACTCGGCACACGAAACGGTCACACCGGTAGCCGGTACCCAGAGCGGTGACCAGCTGATCGAGACCCTGC GCAACGTAGTCAAGACGCAC
Product: Htype VI secretion system Vgr family protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; VgrG Protein; Vgr-Related Protein; Rhs Accessory Genetic Element; Vgr Related Protein; Rhs Family Protein; VGR-Like Protein; RHS Accessory Genetic Element; Rhs-Family Protein; Replication/Virulence Associated Protein; Type VI Secretion System Rhs Element Vgr Protein; VGR-Related Type VI Secretion System Protein; Type VI Secretion System VgrG Family Protein; Rhs Element Protein VgrE; VrgG Protein; Rhs Element Vgr Related Protein
Number of amino acids: Translated: 786; Mature: 785
Protein sequence:
>786_residues MSSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPARFTIAPIDPNMGYLRKMFGEN AEQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVLADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQL RHQYKRHEYVTQYHETTFAFIQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEK RTRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRRHEAYLANQITFKGTGNPFWL EAGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEGIPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTE QGWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHT RNIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVAVRGAKGVFISADAQYAARGK QLDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKALFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIA TAGGNADFGIIKRFTVAAGEAVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGG SYIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSAATVVLE
Sequences:
>Translated_786_residues MSSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPARFTIAPIDPNMGYLRKMFGEN AEQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVLADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQL RHQYKRHEYVTQYHETTFAFIQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEK RTRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRRHEAYLANQITFKGTGNPFWL EAGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEGIPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTE QGWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHT RNIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVAVRGAKGVFISADAQYAARGK QLDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKALFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIA TAGGNADFGIIKRFTVAAGEAVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGG SYIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSAATVVLE >Mature_785_residues SSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPARFTIAPIDPNMGYLRKMFGENA EQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVLADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQLR HQYKRHEYVTQYHETTFAFIQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEKR TRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRRHEAYLANQITFKGTGNPFWLE AGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEGIPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTEQ GWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHTR NIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVAVRGAKGVFISADAQYAARGKQ LDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKALFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIAT AGGNADFGIIKRFTVAAGEAVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGGS YIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSAATVVLE
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87011; Mature: 86880
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPAR CCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHCCEEECCCCCCCCHHHHCCCCCE FTIAPIDPNMGYLRKMFGENAEQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVL EEEEECCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHH ADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQLRHQYKRHEYVTQYHETTFAF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEK HHHHHHCCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHH RTRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRR HHHHCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH HEAYLANQITFKGTGNPFWLEAGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEG HHHHHHHCEEEECCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEEEC IPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTEQGWYVIKLPFDLDEWSPGGT CCCCCCCCCCHHHHCCCCCCCCCCCEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCC SRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHT CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHH RNIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVA HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEE VRGAKGVFISADAQYAARGKQLDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKA EECCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIATAGGNADFGIIKRFTVAAGE HHHHHHHHHHHCCEEEECCCCCEEECCCCEEECCCCCEEEECCCCCCHHHHHHHHHHCCH AVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGG HHHHHHHHHCCEEEEECCEEEEEEECCCCCHHHHHCEEEECCCCEEEEEECCEEEEECCC SYIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSA CEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC ATVVLE EEEEEC >Mature Secondary Structure SSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPAR CCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHCCEEECCCCCCCCHHHHCCCCCE FTIAPIDPNMGYLRKMFGENAEQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVL EEEEECCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHH ADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQLRHQYKRHEYVTQYHETTFAF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEK HHHHHHCCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHH RTRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRR HHHHCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH HEAYLANQITFKGTGNPFWLEAGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEG HHHHHHHCEEEECCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEEEC IPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTEQGWYVIKLPFDLDEWSPGGT CCCCCCCCCCHHHHCCCCCCCCCCCEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCC SRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHT CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHH RNIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVA HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEE VRGAKGVFISADAQYAARGKQLDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKA EECCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIATAGGNADFGIIKRFTVAAGE HHHHHHHHHHHCCEEEECCCCCEEECCCCEEECCCCCEEEECCCCCCHHHHHHHHHHCCH AVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGG HHHHHHHHHCCEEEEECCEEEEEEECCCCCHHHHHCEEEECCCCEEEEEECCEEEEECCC SYIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSA CEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC ATVVLE EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA