| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is sgaE [C]
Identifier: 238024488
GI number: 238024488
Start: 1388807
End: 1389592
Strand: Reverse
Name: sgaE [C]
Synonym: bglu_2g10870
Alternate gene names: 238024488
Gene position: 1389592-1388807 (Counterclockwise)
Preceding gene: 238024489
Following gene: 238024480
Centisome position: 49.15
GC content: 69.85
Gene sequence:
>786_bases ATGGCCCATCAGCTCACTAGCGGCGCCGCGCCGGACGGCCGGCGCACCGGGCTCGACTCGGACGCGGTGCGGACCGCGCG CATCGAACTCGCGGCCTGCTTTCGGCTCGCCGCGCAACACGGCTTCGAGGAAGGCATCTGCAACCATTTCTCGGCGGTGG TGCCGGGCCATGACGACCTGTTTCTCGTGAATCCTTACGGCTACGCGTTTTCGGAGATCACCGCGTCGCGACTGCTGATC TGCGATTACGACGGCAACGTGATCGAGGGCGAGGGCCAGCCCGAGGCCACGGCCTTATCGATCCATGCGCGGCTGCATCG CGCGCTGCCGCGCGTGAAGGCGGCCTTCCACACCCACATGCCGAACGCGACGGCGCTGTGCCTGCTCGAAGGGCCGCCGC TGCTGTGGCTCGGGCAAAGCGCGCTGAAATTCCATGGGCGCACCGCCGTGGACGAGCAGTACAACGGGCTCGCGCTCGAC GCCGCGGAGGGCGACCGGATCGCGGCCGCGCTCGGCGAGGCCGACGTGCTGTTCCTGAAGAACCACGGCGTGATCGTCGC GGGCGCGAGCATCGCCGAGGCCTGGGACGATCTCTATTACCTCGAGCGGGCGGCCGAGGTGCAGCTCAAGGCGATGCAGA CCGGCCGCCCGCTGCAGACGGTGCCGCGCCATATCGCGCAGCGCGCCCATGAACAGATACGGCTTGGCGATCCGGCCAGC GCGCGGGCCCACCTGGACAGCGCGCTGCGCCGGCTGCGCGCGGCCGGCAGCGATTTCGAGCAGTGA
Upstream 100 bases:
>100_bases CGGCCCGCACCGACGAGGGCACGATCACGCCCGCACGATTTGCGTCGCCGGGTTGGTAAGCTTATGCCTTTGCGTTTCCA GTTCCGCGGAGGACAGGCAG
Downstream 100 bases:
>100_bases GCGATGGATGGGGGCCGGCTGCCGGGCCGGCTGGCGGCGGCAGGCTCGGTTCAGTCGAAATGGTCAGAATCGGTGCTCTG CCGGCGGCACGCCTGCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MAHQLTSGAAPDGRRTGLDSDAVRTARIELAACFRLAAQHGFEEGICNHFSAVVPGHDDLFLVNPYGYAFSEITASRLLI CDYDGNVIEGEGQPEATALSIHARLHRALPRVKAAFHTHMPNATALCLLEGPPLLWLGQSALKFHGRTAVDEQYNGLALD AAEGDRIAAALGEADVLFLKNHGVIVAGASIAEAWDDLYYLERAAEVQLKAMQTGRPLQTVPRHIAQRAHEQIRLGDPAS ARAHLDSALRRLRAAGSDFEQ
Sequences:
>Translated_261_residues MAHQLTSGAAPDGRRTGLDSDAVRTARIELAACFRLAAQHGFEEGICNHFSAVVPGHDDLFLVNPYGYAFSEITASRLLI CDYDGNVIEGEGQPEATALSIHARLHRALPRVKAAFHTHMPNATALCLLEGPPLLWLGQSALKFHGRTAVDEQYNGLALD AAEGDRIAAALGEADVLFLKNHGVIVAGASIAEAWDDLYYLERAAEVQLKAMQTGRPLQTVPRHIAQRAHEQIRLGDPAS ARAHLDSALRRLRAAGSDFEQ >Mature_260_residues AHQLTSGAAPDGRRTGLDSDAVRTARIELAACFRLAAQHGFEEGICNHFSAVVPGHDDLFLVNPYGYAFSEITASRLLIC DYDGNVIEGEGQPEATALSIHARLHRALPRVKAAFHTHMPNATALCLLEGPPLLWLGQSALKFHGRTAVDEQYNGLALDA AEGDRIAAALGEADVLFLKNHGVIVAGASIAEAWDDLYYLERAAEVQLKAMQTGRPLQTVPRHIAQRAHEQIRLGDPASA RAHLDSALRRLRAAGSDFEQ
Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]
COG id: COG0235
COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldolase class II family [H]
Homologues:
Organism=Homo sapiens, GI29826323, Length=199, Percent_Identity=30.6532663316583, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI29826325, Length=199, Percent_Identity=30.6532663316583, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI29826321, Length=199, Percent_Identity=30.6532663316583, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI29826319, Length=199, Percent_Identity=30.6532663316583, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI89276787, Length=195, Percent_Identity=27.1794871794872, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI297307160, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI9257190, Length=196, Percent_Identity=27.0408163265306, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI297307158, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI9257192, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI9943848, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9951927, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI62912453, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533216, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI115533218, Length=195, Percent_Identity=32.3076923076923, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71989555, Length=222, Percent_Identity=31.5315315315315, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71989560, Length=222, Percent_Identity=31.5315315315315, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71989544, Length=222, Percent_Identity=31.5315315315315, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71989550, Length=222, Percent_Identity=31.5315315315315, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71989541, Length=222, Percent_Identity=31.5315315315315, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI281363755, Length=217, Percent_Identity=30.8755760368664, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI281363751, Length=217, Percent_Identity=30.8755760368664, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24655690, Length=217, Percent_Identity=30.8755760368664, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24655685, Length=217, Percent_Identity=30.8755760368664, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI281363761, Length=217, Percent_Identity=30.8755760368664, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI281363759, Length=217, Percent_Identity=30.8755760368664, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI281363753, Length=217, Percent_Identity=30.8755760368664, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI281363763, Length=214, Percent_Identity=31.3084112149533, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI281363757, Length=214, Percent_Identity=31.3084112149533, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI17136738, Length=214, Percent_Identity=31.3084112149533, Blast_Score=80, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001303 [H]
Pfam domain/function: PF00596 Aldolase_II [H]
EC number: 5.1.-.- [C]
Molecular weight: Translated: 28226; Mature: 28095
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHQLTSGAAPDGRRTGLDSDAVRTARIELAACFRLAAQHGFEEGICNHFSAVVPGHDDL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCE FLVNPYGYAFSEITASRLLICDYDGNVIEGEGQPEATALSIHARLHRALPRVKAAFHTHM EEECCCCCHHHHHHHCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC PNATALCLLEGPPLLWLGQSALKFHGRTAVDEQYNGLALDAAEGDRIAAALGEADVLFLK CCCEEEEEECCCCEEEECCHHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCEEEEEE NHGVIVAGASIAEAWDDLYYLERAAEVQLKAMQTGRPLQTVPRHIAQRAHEQIRLGDPAS CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCH ARAHLDSALRRLRAAGSDFEQ HHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AHQLTSGAAPDGRRTGLDSDAVRTARIELAACFRLAAQHGFEEGICNHFSAVVPGHDDL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCCE FLVNPYGYAFSEITASRLLICDYDGNVIEGEGQPEATALSIHARLHRALPRVKAAFHTHM EEECCCCCHHHHHHHCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC PNATALCLLEGPPLLWLGQSALKFHGRTAVDEQYNGLALDAAEGDRIAAALGEADVLFLK CCCEEEEEECCCCEEEECCHHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCEEEEEE NHGVIVAGASIAEAWDDLYYLERAAEVQLKAMQTGRPLQTVPRHIAQRAHEQIRLGDPAS CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCH ARAHLDSALRRLRAAGSDFEQ HHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]