| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is pvdQ [H]
Identifier: 238024420
GI number: 238024420
Start: 1291065
End: 1293842
Strand: Direct
Name: pvdQ [H]
Synonym: bglu_2g10130
Alternate gene names: 238024420
Gene position: 1291065-1293842 (Clockwise)
Preceding gene: 238024419
Following gene: 339717971
Centisome position: 45.66
GC content: 75.52
Gene sequence:
>2778_bases ATGGTTTTCGCAGCATGGAGGAAGGGGTATGGCACGGCCGGCCGGATCGGCCGGCGATGCTCGGCATGGGCAGGCAGGCT CGCGCTCGTCGCGAGCGTCGCGGGCGCGGCCGGCAGCGCCGGTTGCAGCGCCCCGCGCGAGACGGGCGCCGATGCGGCAA CCCAGGCGGCAGCCAGGCCGGCGGCCGGCGGGCCGGCCAAGCCGGCTGCCGCTTCGGAGGTCGCAGCGGGCGTTGCTGCG CCGGCCGGCGCGGCCGACATCGCGGCCGCCGCTTCGGGCCTGGCTGCCACGGTCGTGATCCGCCGCACCACCGACGGCAT CCCGCACATCGAGGCCGCGAACTGGCAGGCGCTCGGCTACGGCTACGGCTACGCGCAGGCGAGCGACAACCTCTGCACGA TGGCCGAGGCGTTCGTCACCTATCGCGGCGAGCGCGCGCGCTTTTTCGGTGCCGGCGGCAAGCCGGCCGCGCGCTCGACG TTCGGCACGCCGACCAATCTCGATTCCGATTTCTTTTTCCGGCTCGTCGCGCCGCCGGCCACGCTCGCTCGCTACCGCCG CAGCCAGCCGCCCGAGCTACGGCAACTGATCAGCGGCTTCGCGGCCGGCTACGACCGCTATCTCGCCGAACTGCGCGCGG GCGGCGCGCCGGGCCGGCATGCCGCCTGCCGCGCGGCGCCGTGGCTTGCGGCCATCACCGCCGACGACGTGGTTCGGCGC CTGTACGCGGCGAACCTGGCCGGCGGCGCGGCGCGGTTCGTCGCGGCGCTCGCGAACGCGCGGCCGCCCGCCGAGGCGGC CCGGCACGCCGGCCTCGCGGCGCGCGGGGCCGCGGCGGCCGCGGCCTCGGGCCTGACGGCGGCCGGCGGGCTGGCCGGGC TCGACGCCGAGGCGATGCAGGTCGGCGGCCACTACGGCATCGGCAGCAACGGCATCGCGTTCGGCCGCGACGCCACGCAC GGCGAGCCGATCCTGCTCGGCAATCCGCACTGGTTCTGGAGCGGCCCCGACCGTTTCTACCAGGCGCAACTGACGATTCC CGGCCGGCTGAACGTGAGCGGCGCATCGTTTCTCGGCGTGCCGGTCATCATGATCGGCTACAACGACGCGGTGGCGTGGA CCCACACGGTGTCCGGCGCGCGCCGCTTCGGCCTGTTCCAGCTGACGCTGGCCGCGGACGACCCCACCGTCTATCGGGTG GACGGCCGGCGCATCGCGATGACGCCGGTGGTGCTGACGGTGCCGGTGCGGCGGCCCGACGGCACGCTCGCCAGCGTCAC GCGCACGCTGTACCGCAGCCGTTACGGCCCGCTCGTCGACCTGTCGTCGTGGTCGCCCGCGCTGGCCTGGACCCGCAGGC AGGCGTTCGCCCTGCGCGACGTGAACGCCGACAACGACGCGATCTTCGCCACCTTCCTCGCCTTCGGCCGCGCGCGTTCG CTCGACGCGTTCATCGCGGCGCAGCGGGCCGCGACCGCGATGCCGTGGGTCAACACGCTGGCGATCGGGCGCGGCGACCC GCGCGTCTGGTACGCCGACATCGGCAACGTGCCGGACGTGCCCGATGCGCTGGCCGACCGCTGCACGCCGCCGCTCGGCC GCGCGTTCGACGCCAGGGTGCCCGGCGTGCCGTTCCTCGACGGCGCGCGCGCCGCCTGCGACTGGCGCCGCGACAGCAGC GCCGCGCGGCCCAGCTCCTTGCCCGCGAGCGCGATGCCGGGCCTGCTGCGGCGCGATTTCGTCGCCAACATGAACAACAG CTACTGGCTCGCGAATCCGGCCGCGCCGCTGACGGGCTTCGCGCGCGTGACGGGCGTCGGTGCCGCGCCGCTCGACCTGC GCGCGCAGCTCGGCCTGCGGTTCGCGATGCGGGCGGCCGCAGCGGCCGCTGCGCCGCATGCTGGGAACCCGGCGAACCCG GCGGCGGTGACGACGGCCGAGGTCGAGCGCTTCTCGCTGGCGGGCGAGACGCTGTCGGCGACACGCTACCGGCCGGCGCT GCTCGATCGCGTCTGCACGAACCCGGTCATCATGGTCGGGCACGACCTGCTGAGCGGTGCCGCTTACCGGCCCGCGCGCC GCGCGCCGACCGCGGCGGCCTGCGCGACGCTGCGTGCCTGGCACGGCGCGGCCGATCCCGAGGCGCGCGGCGTCCTGCTG TGGGACCAGTTCTGGGCGCGCGTCGCGAAGCTCGCGCCGGCGCGGCTCTACACGCAGCCGTTCGACGCGGCCGATCCGCT GCATACGCCGGCGGGCTTGCGCGCCGACGATCCCGCGATCGCCGAGGCGTTCGGCGCGGCGATCCTGGCCGTGACCGACG CCGGCTTCGCGCTCGATGCCAGGCGCGGCGAGACGCTCTACCTGACGCGCAACGGCGAGTCGATCCCGCTCTACGGCGGC TGCGCCAATCTCGGCTACTTCACCGCCGTCTGCGACTACGGCAAGCCCCGCGCGCGCCAGCCGATCACGGCCGACACGCT GGCGGGCAACAGCTACCTGCAGGTGGTCACCTTCGATGCACGCGGCCCCGAGGCCCATACGCTGCTCGCGCATTCGGAAT CCGACGATCCGGCCTCGCCGCATTACGCCGACGGCACGCGTCGCTACGCGGCGCGGCGCTGGCTGCGCACGCCGTTCGAG GCGCGGGCCATCGCGGCCGACCCGGGGCTCGACGTCACGCGCCTGACGCTGCCGGCGGCGCTCGCCGAAGGCCCGCACCC GCCCGACGCGGCCGACGCGGCTAGCACGGCTGGCGCGGCTGGCGCGGCACGGCCCTAG
Upstream 100 bases:
>100_bases CGAGAGAGGCCATGACCGACCGGCACCGGCCGCGCATTGCGCGCCGGCGCGACCGGTCGGAACCGGCTTCGGCCATCCGT CAGTCACGCATGGGAGGCAC
Downstream 100 bases:
>100_bases GCGCCGGCCGGCCGCGGGGCAGCGGCGTGCCGAAGCGCCAAGCGTGAGCCTGGGCGGCCGACAAGCCCGCGCGCCGATCT TTCCGCAGCGCGGGCGATTG
Product: putative aculeacin a acylase transmembrane protein
Products: NA
Alternate protein names: AHL acylase pvdQ; Acyl-HSL acylase pvdQ; Acyl-HSL acylase pvdQ subunit alpha; Acyl-HSL acylase pvdQ subunit beta [H]
Number of amino acids: Translated: 925; Mature: 925
Protein sequence:
>925_residues MVFAAWRKGYGTAGRIGRRCSAWAGRLALVASVAGAAGSAGCSAPRETGADAATQAAARPAAGGPAKPAAASEVAAGVAA PAGAADIAAAASGLAATVVIRRTTDGIPHIEAANWQALGYGYGYAQASDNLCTMAEAFVTYRGERARFFGAGGKPAARST FGTPTNLDSDFFFRLVAPPATLARYRRSQPPELRQLISGFAAGYDRYLAELRAGGAPGRHAACRAAPWLAAITADDVVRR LYAANLAGGAARFVAALANARPPAEAARHAGLAARGAAAAAASGLTAAGGLAGLDAEAMQVGGHYGIGSNGIAFGRDATH GEPILLGNPHWFWSGPDRFYQAQLTIPGRLNVSGASFLGVPVIMIGYNDAVAWTHTVSGARRFGLFQLTLAADDPTVYRV DGRRIAMTPVVLTVPVRRPDGTLASVTRTLYRSRYGPLVDLSSWSPALAWTRRQAFALRDVNADNDAIFATFLAFGRARS LDAFIAAQRAATAMPWVNTLAIGRGDPRVWYADIGNVPDVPDALADRCTPPLGRAFDARVPGVPFLDGARAACDWRRDSS AARPSSLPASAMPGLLRRDFVANMNNSYWLANPAAPLTGFARVTGVGAAPLDLRAQLGLRFAMRAAAAAAAPHAGNPANP AAVTTAEVERFSLAGETLSATRYRPALLDRVCTNPVIMVGHDLLSGAAYRPARRAPTAAACATLRAWHGAADPEARGVLL WDQFWARVAKLAPARLYTQPFDAADPLHTPAGLRADDPAIAEAFGAAILAVTDAGFALDARRGETLYLTRNGESIPLYGG CANLGYFTAVCDYGKPRARQPITADTLAGNSYLQVVTFDARGPEAHTLLAHSESDDPASPHYADGTRRYAARRWLRTPFE ARAIAADPGLDVTRLTLPAALAEGPHPPDAADAASTAGAAGAARP
Sequences:
>Translated_925_residues MVFAAWRKGYGTAGRIGRRCSAWAGRLALVASVAGAAGSAGCSAPRETGADAATQAAARPAAGGPAKPAAASEVAAGVAA PAGAADIAAAASGLAATVVIRRTTDGIPHIEAANWQALGYGYGYAQASDNLCTMAEAFVTYRGERARFFGAGGKPAARST FGTPTNLDSDFFFRLVAPPATLARYRRSQPPELRQLISGFAAGYDRYLAELRAGGAPGRHAACRAAPWLAAITADDVVRR LYAANLAGGAARFVAALANARPPAEAARHAGLAARGAAAAAASGLTAAGGLAGLDAEAMQVGGHYGIGSNGIAFGRDATH GEPILLGNPHWFWSGPDRFYQAQLTIPGRLNVSGASFLGVPVIMIGYNDAVAWTHTVSGARRFGLFQLTLAADDPTVYRV DGRRIAMTPVVLTVPVRRPDGTLASVTRTLYRSRYGPLVDLSSWSPALAWTRRQAFALRDVNADNDAIFATFLAFGRARS LDAFIAAQRAATAMPWVNTLAIGRGDPRVWYADIGNVPDVPDALADRCTPPLGRAFDARVPGVPFLDGARAACDWRRDSS AARPSSLPASAMPGLLRRDFVANMNNSYWLANPAAPLTGFARVTGVGAAPLDLRAQLGLRFAMRAAAAAAAPHAGNPANP AAVTTAEVERFSLAGETLSATRYRPALLDRVCTNPVIMVGHDLLSGAAYRPARRAPTAAACATLRAWHGAADPEARGVLL WDQFWARVAKLAPARLYTQPFDAADPLHTPAGLRADDPAIAEAFGAAILAVTDAGFALDARRGETLYLTRNGESIPLYGG CANLGYFTAVCDYGKPRARQPITADTLAGNSYLQVVTFDARGPEAHTLLAHSESDDPASPHYADGTRRYAARRWLRTPFE ARAIAADPGLDVTRLTLPAALAEGPHPPDAADAASTAGAAGAARP >Mature_925_residues MVFAAWRKGYGTAGRIGRRCSAWAGRLALVASVAGAAGSAGCSAPRETGADAATQAAARPAAGGPAKPAAASEVAAGVAA PAGAADIAAAASGLAATVVIRRTTDGIPHIEAANWQALGYGYGYAQASDNLCTMAEAFVTYRGERARFFGAGGKPAARST FGTPTNLDSDFFFRLVAPPATLARYRRSQPPELRQLISGFAAGYDRYLAELRAGGAPGRHAACRAAPWLAAITADDVVRR LYAANLAGGAARFVAALANARPPAEAARHAGLAARGAAAAAASGLTAAGGLAGLDAEAMQVGGHYGIGSNGIAFGRDATH GEPILLGNPHWFWSGPDRFYQAQLTIPGRLNVSGASFLGVPVIMIGYNDAVAWTHTVSGARRFGLFQLTLAADDPTVYRV DGRRIAMTPVVLTVPVRRPDGTLASVTRTLYRSRYGPLVDLSSWSPALAWTRRQAFALRDVNADNDAIFATFLAFGRARS LDAFIAAQRAATAMPWVNTLAIGRGDPRVWYADIGNVPDVPDALADRCTPPLGRAFDARVPGVPFLDGARAACDWRRDSS AARPSSLPASAMPGLLRRDFVANMNNSYWLANPAAPLTGFARVTGVGAAPLDLRAQLGLRFAMRAAAAAAAPHAGNPANP AAVTTAEVERFSLAGETLSATRYRPALLDRVCTNPVIMVGHDLLSGAAYRPARRAPTAAACATLRAWHGAADPEARGVLL WDQFWARVAKLAPARLYTQPFDAADPLHTPAGLRADDPAIAEAFGAAILAVTDAGFALDARRGETLYLTRNGESIPLYGG CANLGYFTAVCDYGKPRARQPITADTLAGNSYLQVVTFDARGPEAHTLLAHSESDDPASPHYADGTRRYAARRWLRTPFE ARAIAADPGLDVTRLTLPAALAEGPHPPDAADAASTAGAAGAARP
Specific function: Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length) [H
COG id: COG2366
COG function: function code R; Protein related to penicillin acylase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S45 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002692 [H]
Pfam domain/function: PF01804 Penicil_amidase [H]
EC number: =3.5.1.97 [H]
Molecular weight: Translated: 96317; Mature: 96317
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFAAWRKGYGTAGRIGRRCSAWAGRLALVASVAGAAGSAGCSAPRETGADAATQAAARP CEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHCCC AAGGPAKPAAASEVAAGVAAPAGAADIAAAASGLAATVVIRRTTDGIPHIEAANWQALGY CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEC GYGYAQASDNLCTMAEAFVTYRGERARFFGAGGKPAARSTFGTPTNLDSDFFFRLVAPPA CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHH TLARYRRSQPPELRQLISGFAAGYDRYLAELRAGGAPGRHAACRAAPWLAAITADDVVRR HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEECHHHHHHH LYAANLAGGAARFVAALANARPPAEAARHAGLAARGAAAAAASGLTAAGGLAGLDAEAMQ HHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCHHCCHHHHHHCCCCCCCCCCCCCHHHHH VGGHYGIGSNGIAFGRDATHGEPILLGNPHWFWSGPDRFYQAQLTIPGRLNVSGASFLGV CCCCCCCCCCCCEECCCCCCCCEEEECCCCEEECCCCCEEEEEEECCCEECCCCCCCCCC PVIMIGYNDAVAWTHTVSGARRFGLFQLTLAADDPTVYRVDGRRIAMTPVVLTVPVRRPD CEEEEECCCCEEEEEECCCHHHCCEEEEEEECCCCEEEEECCCEEEECEEEEEEEEECCC GTLASVTRTLYRSRYGPLVDLSSWSPALAWTRRQAFALRDVNADNDAIFATFLAFGRARS CHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCC LDAFIAAQRAATAMPWVNTLAIGRGDPRVWYADIGNVPDVPDALADRCTPPLGRAFDARV HHHHHHHHHHHHHCCCHHHEEECCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCC PGVPFLDGARAACDWRRDSSAARPSSLPASAMPGLLRRDFVANMNNSYWLANPAAPLTGF CCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEECCCCCCCHH ARVTGVGAAPLDLRAQLGLRFAMRAAAAAAAPHAGNPANPAAVTTAEVERFSLAGETLSA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCHHHH TRYRPALLDRVCTNPVIMVGHDLLSGAAYRPARRAPTAAACATLRAWHGAADPEARGVLL HCCCHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE WDQFWARVAKLAPARLYTQPFDAADPLHTPAGLRADDPAIAEAFGAAILAVTDAGFALDA HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCEEEEC RRGETLYLTRNGESIPLYGGCANLGYFTAVCDYGKPRARQPITADTLAGNSYLQVVTFDA CCCCEEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEECC RGPEAHTLLAHSESDDPASPHYADGTRRYAARRWLRTPFEARAIAADPGLDVTRLTLPAA CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEHEEHHHH LAEGPHPPDAADAASTAGAAGAARP HHCCCCCCCHHHHHHCCCCCCCCCC >Mature Secondary Structure MVFAAWRKGYGTAGRIGRRCSAWAGRLALVASVAGAAGSAGCSAPRETGADAATQAAARP CEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHCCC AAGGPAKPAAASEVAAGVAAPAGAADIAAAASGLAATVVIRRTTDGIPHIEAANWQALGY CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEEC GYGYAQASDNLCTMAEAFVTYRGERARFFGAGGKPAARSTFGTPTNLDSDFFFRLVAPPA CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHH TLARYRRSQPPELRQLISGFAAGYDRYLAELRAGGAPGRHAACRAAPWLAAITADDVVRR HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEECHHHHHHH LYAANLAGGAARFVAALANARPPAEAARHAGLAARGAAAAAASGLTAAGGLAGLDAEAMQ HHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCHHCCHHHHHHCCCCCCCCCCCCCHHHHH VGGHYGIGSNGIAFGRDATHGEPILLGNPHWFWSGPDRFYQAQLTIPGRLNVSGASFLGV CCCCCCCCCCCCEECCCCCCCCEEEECCCCEEECCCCCEEEEEEECCCEECCCCCCCCCC PVIMIGYNDAVAWTHTVSGARRFGLFQLTLAADDPTVYRVDGRRIAMTPVVLTVPVRRPD CEEEEECCCCEEEEEECCCHHHCCEEEEEEECCCCEEEEECCCEEEECEEEEEEEEECCC GTLASVTRTLYRSRYGPLVDLSSWSPALAWTRRQAFALRDVNADNDAIFATFLAFGRARS CHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCC LDAFIAAQRAATAMPWVNTLAIGRGDPRVWYADIGNVPDVPDALADRCTPPLGRAFDARV HHHHHHHHHHHHHCCCHHHEEECCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCC PGVPFLDGARAACDWRRDSSAARPSSLPASAMPGLLRRDFVANMNNSYWLANPAAPLTGF CCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEECCCCCCCHH ARVTGVGAAPLDLRAQLGLRFAMRAAAAAAAPHAGNPANPAAVTTAEVERFSLAGETLSA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCHHHH TRYRPALLDRVCTNPVIMVGHDLLSGAAYRPARRAPTAAACATLRAWHGAADPEARGVLL HCCCHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE WDQFWARVAKLAPARLYTQPFDAADPLHTPAGLRADDPAIAEAFGAAILAVTDAGFALDA HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCEEEEC RRGETLYLTRNGESIPLYGGCANLGYFTAVCDYGKPRARQPITADTLAGNSYLQVVTFDA CCCCEEEEEECCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEECC RGPEAHTLLAHSESDDPASPHYADGTRRYAARRWLRTPFEARAIAADPGLDVTRLTLPAA CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEHEEHHHH LAEGPHPPDAADAASTAGAAGAARP HHCCCCCCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA