Click here to switch to the map view.

The map label for this gene is tcp [H]

Identifier: 238024348

GI number: 238024348

Start: 1157800

End: 1159593

Strand: Reverse

Name: tcp [H]

Synonym: bglu_2g09390

Alternate gene names: 238024348

Gene position: 1159593-1157800 (Counterclockwise)

Preceding gene: 238024349

Following gene: 238024345

Centisome position: 41.01

GC content: 64.21

Gene sequence:

>1794_bases
ATGCTGTCGTCTATTCGTGCCCGCGTCGTTCTCGCGTGCGTCGCGCTGGTCGTCTTTTCAGTCCTCACAAGCACCGCGAC
GGACTATTCGATAGCGAGGTCGAGCATGGAGGCTTCGATCGCCCATGAATTGACTTCGTCCTCCAACGATCACGCCGCCG
AGATCGGCGAGTGGATCGCGGGGAAAACCCAGATGATCGCGTCGCTACAAGACGTCGTTCTCACGAACGACCCTCTCCCC
ATGCTTCAGCAGATCGCCGTCGCGGGGGGATTCTTCGACGTCGGCGTTGGTTACCCCGACAAAACCGCGAAGTTCAACGA
TTGGCCGCACCCGCCTTCCAGCTATGACCCGACAGCCCGCCCCTGGTATCAGGCCGCCGCGCAAAGCGGCAAGCCCGTTG
CGATCCCCTATGTCAGCACCAGTGGCGCGCTGCTGGTGGGGCTGGGCATCCCGGTGATACGCGACGGCGTGGTGAAGGCC
GTGCTGGATGGCAATATTGCCTTGGACAGCGTGGTTGGAAACGTGAAATCGATCCATCCGACACCGTCGAGTTTCGGCAT
GCTCGTCGATCGCAGCGGCCGCATCATCGCGCATCCCGATCCGAAGCTAAGGCTCAAGCCGGTCACCGACGTTGCCGCCG
ATTTCATGAGCGTCATCACCGGATCGGCGGGCCCGGGAACCGCGCCGATGAAGATTGTGGTCGACGGGAGGACGAAGCTG
GTGCGTGCGCAAAGCGTGCCGGGAACCGACTGGGACGTCATCGTCGCGCTCGACGAGTCCGAGGCCACGGCTGGCATGCG
CTCGCTACTGAGTGCCTCGGTGGTGGCCCTCCTCGTTATCGTCGGCGTGGCCTCCGTCATCGGCACGGCGATTACCGCGA
CCGCGTTCCGCCGCCTTGGCAACGTCTGCCAAGCGATGGCGAAAATCGGCGCGGGCACCGGCGACCTGACCCAGCGCCTG
AGGGACGAGGGCCGCGACGAAGTCGCCAACATCGCGCGCTCTTTCAACCAGTTCGTGGCCAAGCTTCAAGGCGTGATGCT
GGAGATTCGTGGCGCGAGCGAATCGGTGGGCGCCGCGGCGAATGAAATTGCCTCGGCAAGTCGAGACCTGTCGACGCGCA
CCGAATCGGCCGCAGCCAGCCTGCAGCAGACCGCCGCCTCGATGGACCAGATCTCGGGAACCGTCGACCAGTCGGCCGCC
GCGGCCACCGAGGCCGACGAGCGATCGAATCTCGCCACGCAAATTGCCTCGCGTGGCGGCGAGATCGTCTCCGACGCGGT
CGGCACCATGAGCGAGATCGAGCATGCGTCCAGCCAGATCGGCACGATCATCCGCGTGATCGACGGCATCGCGTTTCAGA
CCAATATTCTCGCGCTCAACGCGGCGGTGGAAGCCGCGCGAGCAGGCGAACAGGGCCGAGGCTTCGCAGTCGTCGCCCAC
GAGGTTCGCACCCTTGCGCAGCGCAGTGCGCAGGCCGCCCGCGAGGTGAAGCAACTGGTGGAGGCGACCGTCTCGCGCGT
CGCCGCGGGATCCTCGCAGGTGCGTCGAGCCGGCGAGACGATGAGCGAGATCGTCAGTAATTCCCAAAATGTTCAGTCGA
TCATCTCCAGCATTGCCCGCGCCTCGACCGAGCAGACGCGCGGGGTTCAGGAGGTCAATCACGCGGTCATGCAACTCGAC
GCGATGGTCCAGCAGAACGCGGCGCTGGTGGAGGAAACGGCAGCCGCATCGACCGCTTTGCAGACGCAAGCCAATGCTCT
GGCATCGGCAATCGGCAGATTTAAAATCGATTGA

Upstream 100 bases:

>100_bases
TTTTTCCGCCGGCAGTCTCTGTCTGCGGTTCGCTTTTTCGCGCCTGACAGGGGGCGCACCTGGGTACGCAAATCACGTGA
TGAAATTCGGAGGCCATAAG

Downstream 100 bases:

>100_bases
AAATCCCTGCGAGACATCTCGCAGCCGGGCATCGGCCCGACTGACGTTCGGCGCTGGATCGCGGGCGCGCGCGCGAGGCG
AGTCACGCGCGCGCCCGTGA

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: Citrate chemoreceptor protein [H]

Number of amino acids: Translated: 597; Mature: 597

Protein sequence:

>597_residues
MLSSIRARVVLACVALVVFSVLTSTATDYSIARSSMEASIAHELTSSSNDHAAEIGEWIAGKTQMIASLQDVVLTNDPLP
MLQQIAVAGGFFDVGVGYPDKTAKFNDWPHPPSSYDPTARPWYQAAAQSGKPVAIPYVSTSGALLVGLGIPVIRDGVVKA
VLDGNIALDSVVGNVKSIHPTPSSFGMLVDRSGRIIAHPDPKLRLKPVTDVAADFMSVITGSAGPGTAPMKIVVDGRTKL
VRAQSVPGTDWDVIVALDESEATAGMRSLLSASVVALLVIVGVASVIGTAITATAFRRLGNVCQAMAKIGAGTGDLTQRL
RDEGRDEVANIARSFNQFVAKLQGVMLEIRGASESVGAAANEIASASRDLSTRTESAAASLQQTAASMDQISGTVDQSAA
AATEADERSNLATQIASRGGEIVSDAVGTMSEIEHASSQIGTIIRVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH
EVRTLAQRSAQAAREVKQLVEATVSRVAAGSSQVRRAGETMSEIVSNSQNVQSIISSIARASTEQTRGVQEVNHAVMQLD
AMVQQNAALVEETAAASTALQTQANALASAIGRFKID

Sequences:

>Translated_597_residues
MLSSIRARVVLACVALVVFSVLTSTATDYSIARSSMEASIAHELTSSSNDHAAEIGEWIAGKTQMIASLQDVVLTNDPLP
MLQQIAVAGGFFDVGVGYPDKTAKFNDWPHPPSSYDPTARPWYQAAAQSGKPVAIPYVSTSGALLVGLGIPVIRDGVVKA
VLDGNIALDSVVGNVKSIHPTPSSFGMLVDRSGRIIAHPDPKLRLKPVTDVAADFMSVITGSAGPGTAPMKIVVDGRTKL
VRAQSVPGTDWDVIVALDESEATAGMRSLLSASVVALLVIVGVASVIGTAITATAFRRLGNVCQAMAKIGAGTGDLTQRL
RDEGRDEVANIARSFNQFVAKLQGVMLEIRGASESVGAAANEIASASRDLSTRTESAAASLQQTAASMDQISGTVDQSAA
AATEADERSNLATQIASRGGEIVSDAVGTMSEIEHASSQIGTIIRVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH
EVRTLAQRSAQAAREVKQLVEATVSRVAAGSSQVRRAGETMSEIVSNSQNVQSIISSIARASTEQTRGVQEVNHAVMQLD
AMVQQNAALVEETAAASTALQTQANALASAIGRFKID
>Mature_597_residues
MLSSIRARVVLACVALVVFSVLTSTATDYSIARSSMEASIAHELTSSSNDHAAEIGEWIAGKTQMIASLQDVVLTNDPLP
MLQQIAVAGGFFDVGVGYPDKTAKFNDWPHPPSSYDPTARPWYQAAAQSGKPVAIPYVSTSGALLVGLGIPVIRDGVVKA
VLDGNIALDSVVGNVKSIHPTPSSFGMLVDRSGRIIAHPDPKLRLKPVTDVAADFMSVITGSAGPGTAPMKIVVDGRTKL
VRAQSVPGTDWDVIVALDESEATAGMRSLLSASVVALLVIVGVASVIGTAITATAFRRLGNVCQAMAKIGAGTGDLTQRL
RDEGRDEVANIARSFNQFVAKLQGVMLEIRGASESVGAAANEIASASRDLSTRTESAAASLQQTAASMDQISGTVDQSAA
AATEADERSNLATQIASRGGEIVSDAVGTMSEIEHASSQIGTIIRVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH
EVRTLAQRSAQAAREVKQLVEATVSRVAAGSSQVRRAGETMSEIVSNSQNVQSIISSIARASTEQTRGVQEVNHAVMQLD
AMVQQNAALVEETAAASTALQTQANALASAIGRFKID

Specific function: Acts as a receptor for citrate and mediates taxis away from phenol. Also mediates an attractant response to metal-citrate complexes [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=344, Percent_Identity=45.6395348837209, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI2367378, Length=345, Percent_Identity=46.9565217391304, Blast_Score=238, Evalue=8e-64,
Organism=Escherichia coli, GI1787690, Length=326, Percent_Identity=44.7852760736196, Blast_Score=232, Evalue=4e-62,
Organism=Escherichia coli, GI1788195, Length=283, Percent_Identity=50.530035335689, Blast_Score=232, Evalue=5e-62,
Organism=Escherichia coli, GI1789453, Length=328, Percent_Identity=36.890243902439, Blast_Score=198, Evalue=9e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 62019; Mature: 62019

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSIRARVVLACVALVVFSVLTSTATDYSIARSSMEASIAHELTSSSNDHAAEIGEWIA
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GKTQMIASLQDVVLTNDPLPMLQQIAVAGGFFDVGVGYPDKTAKFNDWPHPPSSYDPTAR
CHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PWYQAAAQSGKPVAIPYVSTSGALLVGLGIPVIRDGVVKAVLDGNIALDSVVGNVKSIHP
HHHHHHHCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCHHHCCC
TPSSFGMLVDRSGRIIAHPDPKLRLKPVTDVAADFMSVITGSAGPGTAPMKIVVDGRTKL
CCCCCCEEEECCCCEEECCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHE
VRAQSVPGTDWDVIVALDESEATAGMRSLLSASVVALLVIVGVASVIGTAITATAFRRLG
EEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVCQAMAKIGAGTGDLTQRLRDEGRDEVANIARSFNQFVAKLQGVMLEIRGASESVGAAA
HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH
NEIASASRDLSTRTESAAASLQQTAASMDQISGTVDQSAAAATEADERSNLATQIASRGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHCCC
EIVSDAVGTMSEIEHASSQIGTIIRVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
EVRTLAQRSAQAAREVKQLVEATVSRVAAGSSQVRRAGETMSEIVSNSQNVQSIISSIAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ASTEQTRGVQEVNHAVMQLDAMVQQNAALVEETAAASTALQTQANALASAIGRFKID
HCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSSIRARVVLACVALVVFSVLTSTATDYSIARSSMEASIAHELTSSSNDHAAEIGEWIA
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GKTQMIASLQDVVLTNDPLPMLQQIAVAGGFFDVGVGYPDKTAKFNDWPHPPSSYDPTAR
CHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PWYQAAAQSGKPVAIPYVSTSGALLVGLGIPVIRDGVVKAVLDGNIALDSVVGNVKSIHP
HHHHHHHCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCHHHCCC
TPSSFGMLVDRSGRIIAHPDPKLRLKPVTDVAADFMSVITGSAGPGTAPMKIVVDGRTKL
CCCCCCEEEECCCCEEECCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHE
VRAQSVPGTDWDVIVALDESEATAGMRSLLSASVVALLVIVGVASVIGTAITATAFRRLG
EEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVCQAMAKIGAGTGDLTQRLRDEGRDEVANIARSFNQFVAKLQGVMLEIRGASESVGAAA
HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH
NEIASASRDLSTRTESAAASLQQTAASMDQISGTVDQSAAAATEADERSNLATQIASRGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHCCC
EIVSDAVGTMSEIEHASSQIGTIIRVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
EVRTLAQRSAQAAREVKQLVEATVSRVAAGSSQVRRAGETMSEIVSNSQNVQSIISSIAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ASTEQTRGVQEVNHAVMQLDAMVQQNAALVEETAAASTALQTQANALASAIGRFKID
HCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8419927; 11677609 [H]