| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is mrkC [H]
Identifier: 238024295
GI number: 238024295
Start: 1065411
End: 1068047
Strand: Reverse
Name: mrkC [H]
Synonym: bglu_2g08800
Alternate gene names: 238024295
Gene position: 1068047-1065411 (Counterclockwise)
Preceding gene: 238024296
Following gene: 238024294
Centisome position: 37.78
GC content: 66.51
Gene sequence:
>2637_bases CTGAACATCCTTCGAGCAAGTCCGAGGCGCAGTCTTATTGCCTCTGCGGCAAGCGCCCTAATCCTATACATCTTTAGTGC CTTATATATGCGTTTGCGCTGTGTGTTTACCCTGTCGATATTTGTGTCAGCGGGAGCGGTAACGCGTAACGTACAGGCGA CGGGAGTGCAGTTTAACGAACAGTTCTTGCAACATCCGGATGGCGTGCGGGTGGATCTTAGCCGCTTCGACAAAGGCAAC GTGGCGGTACCTGGCTCGTATCGCTCAGACTTATACGTCAACGGCGCTTGGGCCGGCCGTACCGATATCACGCTGAGCCA GATCGGCGACGATCCGGCCAACGTACAAACCTGCTTCGATCGCGAGTTGCTGATGCGGGTCGGTGTGGCGCTCTCAAAGC TCTCCACGCAGACCCGTGCAACGCTGGCAACCGCCGAGACCGGCGCCTGCGTCACGCTCGACGCGCTGGTGCCCGACGCC AGCGCCGTGTTCGACAACGGCGCGCAGCGGCTCGACGTCAGCGTGCCGCAGGCGTTCCAGAGCCGCGACGCGCGCGGCTA CGTTGATCCGCGCGAGTGGGACGACGGCGTACCGGCCGCGCTGTTGCAATACAACGCGAACGTCTATCGCTCCGAAGGAC AGGGCGAGCCGTCGACGCAGGCCTACCTGGGGATGACCGCCGGCTTCAACGCCGGGCCGTGGCGCTTCCGGCACAACGGC AACCTGACCTACAACTCGCGGCAAGGCACGCATTACCAGTCGATCCAGACCTACGTGCAGCGCTCGATCGCGCGGCTCAA GAGCCAGTTCATGATCGGCGAGGCCTATACCGACGGCACGATGTTCGACAGCGTCGGGTTTCGCGGCGTGCGGATCGCGA GCGACGAGCGCATGTACCCGGAGTCGCAGCGCGGCTATGCGCCGACCGTGCATGGCATCGCCAACAGCAACGCGCTAGTG CAGGTGCGGCAGAACGGCAACGTCATCTACAGCACCAACGTCGCGGCCGGCCCGTTCGAGATCGACGATCTCTATCCGAC CGGATACGGCGGCGATCTCGAGGTCGTGGTGACCGAAGCCGACGGCAGAATCCACACCTTCAACGTGCCGTATGCGTCAA CCGTGGATGCGCTGCGGCCCGGCATCACGCATTTCAGCGTGACGGCCGGCCAGTATCGCGACCCGACGCTGTCGACCCAG CCAGCGCTGTTCCAGGCCACCGTCCGGCACGGCTTCACGAACCTGATCACGGTCTACGGCGGCGTGACGGCCGCGCCGGG CTACGGCGCCGGCCTGGTGGGGGTGGCGCTCAACACGCGCTTCGGCGCATTCGGCCTCGACATCACCCACGCCAACACGA GCCTGCCGGGAGTCGGCACGCGCCATGGCCAGAGCGTGAAGCTCTCGTACAGCAAGCTGATCGCCCCGACATCCACCAAC CTCACGGTGGCCGCCTATCGCTATTCGAGCAGCGGCTACCTGAGCCTGCACGACGCGATGCAGATGCGCGAGCCGTCGGC CAGCCGGCCGGATGGGCCGTGGCGCGGCGGCATCCTGCGCGGGCAGTTGCAGATCGCCGTGAACCAGACGCTGCCGTCGG GATGGGGATCGTTCTATGCGTCGGGCTCAACGGTCAGCTACTGGAACCGGCACGGCACCGACACGCAGTTCCAGGCCGGC TACAACAACAATTTCCGGCGCCTCAATTTCGGCGTGGCCGTGGCGCGCCAGTTCGATGCCACGCGCCGCCGGTGGGACAA CCGGGTCATGCTGAACGTCTCGCTGCCGCTGGGCGGCAGCCGCCATCCGGTCTATGCGTCGACCAACCTGCAGCGTGACT CGAGCGGCGAGACCTCGCTGCAGCAATCGTTGGCGGGCACGCTCGGCGCGGCCAACCAGCTGAACTACGGCATCAACCTC GGCCGCGCGAGCTTCCGCGGCGCGGGCGCCTCCACCAACTTGAGCGGCAACGCGTCGTATCTGTCGCGCTATGCGACGGT GACCGTGAACGCGTCGAAGGGCACGGGCTTCACGCAGTACGGCGGCGGCCTGTCGGGCGGCATGGTCGCCTATGCGGGTG GGGTCGCGTTCACCCCGAGCATGAGCGAAACGGTGGCGGTCATCGAGGCCAAGGGCGCGAGCGGCGCGCGCGTCATGTCC GGCAGCGGTCTGCGCATCGATCCGTTCGGGCACGCGATCGTGTCGAGCCTGATGCCGTTCCAGACCAACGAGGTCGAGAT CGATCCGAAAGGCCTGCCGATGAGCGTCGAACTGAAATCGACCACGCAGCATGCCGTGCCGACGGCGGGCGCGGTGGTGC GGCTGCGCTTCCGGACAGAAGGTGGCGGGCGCTCCGTGATCATGCGGATCCGCACTCGCGACGGCAAGCCGGTGCCGTTC GGCGCCGAGGTGTTCAACGCGCAAGGGCAGTCTGCCGGCACCGTGGCGCAGATGGGCAGCGTCGTGTTGCGCGGCGTGAA GGCGAACACGGGCACGCTGCGCGTGAAGTGGGGCGAGGCGGCCTCGGACGGCTGCACGCTGTCGTACAGGCTGCCGGTCG CGAAGCACGGGCGCGCGGCGCGCTGGACCTCCACGTACGCGGTTTGTCTGCCCGCTCCCGCCGAGCGCGCAAAATAG
Upstream 100 bases:
>100_bases CGCGAAAGTGCATTACACGACCGTGAATGACTACGGCGCCTTCGTCGATGGCGAAACGCCCGTACTACCAAGCGGCGCGG CGTTACTGAAGTGAAACTGG
Downstream 100 bases:
>100_bases CCGACAGAACGGATGCAGTGCCGCACATCGCCGATTTCGTGTAGTACTACATACCTAATTTTGAAGAATACGGAGGTAAC ACGGACATGTTGGATGTAAT
Product: Fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNEQFLQHPDGVRVDLSRFDKGN VAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFDRELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDA SAVFDNGAQRLDVSVPQAFQSRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYPESQRGYAPTVHGIANSNALV QVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEADGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQ PALFQATVRHGFTNLITVYGGVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYASGSTVSYWNRHGTDTQFQAG YNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGSRHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINL GRASFRGAGASTNLSGNASYLSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTEGGGRSVIMRIRTRDGKPVPF GAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEAASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK
Sequences:
>Translated_878_residues MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNEQFLQHPDGVRVDLSRFDKGN VAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFDRELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDA SAVFDNGAQRLDVSVPQAFQSRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYPESQRGYAPTVHGIANSNALV QVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEADGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQ PALFQATVRHGFTNLITVYGGVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYASGSTVSYWNRHGTDTQFQAG YNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGSRHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINL GRASFRGAGASTNLSGNASYLSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTEGGGRSVIMRIRTRDGKPVPF GAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEAASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK >Mature_878_residues MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNEQFLQHPDGVRVDLSRFDKGN VAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFDRELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDA SAVFDNGAQRLDVSVPQAFQSRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYPESQRGYAPTVHGIANSNALV QVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEADGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQ PALFQATVRHGFTNLITVYGGVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYASGSTVSYWNRHGTDTQFQAG YNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGSRHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINL GRASFRGAGASTNLSGNASYLSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTEGGGRSVIMRIRTRDGKPVPF GAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEAASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK
Specific function: Involved in the export and assembly of the type 3 fimbrial subunit (mrkA) [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786332, Length=821, Percent_Identity=35.5663824604141, Blast_Score=499, Evalue=1e-142, Organism=Escherichia coli, GI1790772, Length=858, Percent_Identity=34.6153846153846, Blast_Score=476, Evalue=1e-135, Organism=Escherichia coli, GI1789533, Length=794, Percent_Identity=35.1385390428212, Blast_Score=448, Evalue=1e-127, Organism=Escherichia coli, GI1786744, Length=843, Percent_Identity=33.6892052194543, Blast_Score=434, Evalue=1e-123, Organism=Escherichia coli, GI1787172, Length=862, Percent_Identity=33.4106728538283, Blast_Score=426, Evalue=1e-120, Organism=Escherichia coli, GI1788427, Length=766, Percent_Identity=32.5065274151436, Blast_Score=398, Evalue=1e-112, Organism=Escherichia coli, GI87081778, Length=808, Percent_Identity=28.3415841584158, Blast_Score=241, Evalue=1e-64, Organism=Escherichia coli, GI1789610, Length=818, Percent_Identity=24.4498777506112, Blast_Score=150, Evalue=4e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 93978; Mature: 93978
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEECCEEECH QFLQHPDGVRVDLSRFDKGNVAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFD HHHCCCCCCEEEHHHCCCCCEEECCCCCCCEEEEEEECCCCCEEHHHCCCCCCHHHHHHH RELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDASAVFDNGAQRLDVSVPQAFQ HHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCCHHHH SRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG CCCCCCCCCCCCCCCCCCHHHEEECCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEECC NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYP CEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEECCCCCCEEEEECCCCCCC ESQRGYAPTVHGIANSNALVQVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEA CCCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEEEC DGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQPALFQATVRHGFTNLITVYG CCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC GVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN CCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHEECCCCCC LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYA EEEEEEEECCCCEEEEHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHEE SGSTVSYWNRHGTDTQFQAGYNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGS CCCEEEECCCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCC RHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINLGRASFRGAGASTNLSGNASY CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH LSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS EEEEEEEEEECCCCCCCHHCCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCCEEEC GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTE CCCCEECCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEC GGGRSVIMRIRTRDGKPVPFGAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEA CCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHEEEEECCCCEEEEEECCC ASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK CCCCCEEEEECCHHHCCCCEEECCEEEEEECCCHHHCC >Mature Secondary Structure MNILRASPRRSLIASAASALILYIFSALYMRLRCVFTLSIFVSAGAVTRNVQATGVQFNE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEECCEEECH QFLQHPDGVRVDLSRFDKGNVAVPGSYRSDLYVNGAWAGRTDITLSQIGDDPANVQTCFD HHHCCCCCCEEEHHHCCCCCEEECCCCCCCEEEEEEECCCCCEEHHHCCCCCCHHHHHHH RELLMRVGVALSKLSTQTRATLATAETGACVTLDALVPDASAVFDNGAQRLDVSVPQAFQ HHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCCHHHH SRDARGYVDPREWDDGVPAALLQYNANVYRSEGQGEPSTQAYLGMTAGFNAGPWRFRHNG CCCCCCCCCCCCCCCCCCHHHEEECCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEECC NLTYNSRQGTHYQSIQTYVQRSIARLKSQFMIGEAYTDGTMFDSVGFRGVRIASDERMYP CEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEECCCCCCEEEEECCCCCCC ESQRGYAPTVHGIANSNALVQVRQNGNVIYSTNVAAGPFEIDDLYPTGYGGDLEVVVTEA CCCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEEEC DGRIHTFNVPYASTVDALRPGITHFSVTAGQYRDPTLSTQPALFQATVRHGFTNLITVYG CCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEC GVTAAPGYGAGLVGVALNTRFGAFGLDITHANTSLPGVGTRHGQSVKLSYSKLIAPTSTN CCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHEECCCCCC LTVAAYRYSSSGYLSLHDAMQMREPSASRPDGPWRGGILRGQLQIAVNQTLPSGWGSFYA EEEEEEEECCCCEEEEHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHEE SGSTVSYWNRHGTDTQFQAGYNNNFRRLNFGVAVARQFDATRRRWDNRVMLNVSLPLGGS CCCEEEECCCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCC RHPVYASTNLQRDSSGETSLQQSLAGTLGAANQLNYGINLGRASFRGAGASTNLSGNASY CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH LSRYATVTVNASKGTGFTQYGGGLSGGMVAYAGGVAFTPSMSETVAVIEAKGASGARVMS EEEEEEEEEECCCCCCCHHCCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCCEEEC GSGLRIDPFGHAIVSSLMPFQTNEVEIDPKGLPMSVELKSTTQHAVPTAGAVVRLRFRTE CCCCEECCCHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEC GGGRSVIMRIRTRDGKPVPFGAEVFNAQGQSAGTVAQMGSVVLRGVKANTGTLRVKWGEA CCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHEEEEECCCCEEEEEECCC ASDGCTLSYRLPVAKHGRAARWTSTYAVCLPAPAERAK CCCCCEEEEECCHHHCCCCEEECCEEEEEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1670938 [H]