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The map label for this gene is yodB [H]

Identifier: 238024193

GI number: 238024193

Start: 935553

End: 936089

Strand: Direct

Name: yodB [H]

Synonym: bglu_2g07720

Alternate gene names: 238024193

Gene position: 935553-936089 (Clockwise)

Preceding gene: 238024192

Following gene: 238024194

Centisome position: 33.09

GC content: 66.85

Gene sequence:

>537_bases
ATGAAGAATATCCTCGCGACCCAGCCGCGCTATAACCGTCCCGCGATCGCCTTCCACTGGCTGATCGTCCTGCTCGTCGC
GCTCGCCTATCTGGCGATCGAGATCCGCGGCCCGAAGGGCACCGACAGCCGCACGTTCTGGACCAGCGTGCATTTCGCCG
CCGGCACGCTGGTGCTGACGCTGTCGATCCTGCGCGTGCTGTGGCGCTTCTCGTCGCGCCGGCCTGACCCGCTGCCGCAG
CCGTTCGTGCTCGCGCTGCTCGCGAAACTCGCGCATCTCATGCTGTACCTGTTCACGCTCGGCCAGCCGCTGCTCGGCAT
CGCGTTCGTCAACATGGGCGGCCACCCCGTGGAGATCACGCCGCTGCATCTGTCGTTTACGCTGTTCGGCCCGAACCCGG
CCCTGCGCGGGCCGCTGAAGGAAACCCACGAGTGGCTCGGCAACGCGTTCTACTATGTGATCGCACTGCACGCGCTGGCC
GCGCTCTGGCATCACTTCGTGAAGCGCGACGCGACGCTGCGCCGGATCCTGCCCTGA

Upstream 100 bases:

>100_bases
GCGGCGCGCCCGGTACAATCGCACCGCGGCAGCCGGCGGACCACCGGCGCCGACACACGCGTCCCATTCATCCTACCAAT
ACCTGCTCGCCGACGCCCCG

Downstream 100 bases:

>100_bases
GCCCGCGCGCGCCGCACGCGCGCCCCGGCTCCCCCGAAGCCGTCCTGTCGCCACCCGGAACGCGGGCGGGTGGGGCGCGG
CGCAGCCCTCGCGCTGCACT

Product: cytochrome b561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKNILATQPRYNRPAIAFHWLIVLLVALAYLAIEIRGPKGTDSRTFWTSVHFAAGTLVLTLSILRVLWRFSSRRPDPLPQ
PFVLALLAKLAHLMLYLFTLGQPLLGIAFVNMGGHPVEITPLHLSFTLFGPNPALRGPLKETHEWLGNAFYYVIALHALA
ALWHHFVKRDATLRRILP

Sequences:

>Translated_178_residues
MKNILATQPRYNRPAIAFHWLIVLLVALAYLAIEIRGPKGTDSRTFWTSVHFAAGTLVLTLSILRVLWRFSSRRPDPLPQ
PFVLALLAKLAHLMLYLFTLGQPLLGIAFVNMGGHPVEITPLHLSFTLFGPNPALRGPLKETHEWLGNAFYYVIALHALA
ALWHHFVKRDATLRRILP
>Mature_178_residues
MKNILATQPRYNRPAIAFHWLIVLLVALAYLAIEIRGPKGTDSRTFWTSVHFAAGTLVLTLSILRVLWRFSSRRPDPLPQ
PFVLALLAKLAHLMLYLFTLGQPLLGIAFVNMGGHPVEITPLHLSFTLFGPNPALRGPLKETHEWLGNAFYYVIALHALA
ALWHHFVKRDATLRRILP

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=172, Percent_Identity=34.8837209302326, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI1787296, Length=181, Percent_Identity=29.8342541436464, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 20116; Mature: 20116

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNILATQPRYNRPAIAFHWLIVLLVALAYLAIEIRGPKGTDSRTFWTSVHFAAGTLVLT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHH
LSILRVLWRFSSRRPDPLPQPFVLALLAKLAHLMLYLFTLGQPLLGIAFVNMGGHPVEIT
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEE
PLHLSFTLFGPNPALRGPLKETHEWLGNAFYYVIALHALAALWHHFVKRDATLRRILP
EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure
MKNILATQPRYNRPAIAFHWLIVLLVALAYLAIEIRGPKGTDSRTFWTSVHFAAGTLVLT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHH
LSILRVLWRFSSRRPDPLPQPFVLALLAKLAHLMLYLFTLGQPLLGIAFVNMGGHPVEIT
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEE
PLHLSFTLFGPNPALRGPLKETHEWLGNAFYYVIALHALAALWHHFVKRDATLRRILP
EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]