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The map label for this gene is ygeR [C]

Identifier: 238024192

GI number: 238024192

Start: 934460

End: 935239

Strand: Direct

Name: ygeR [C]

Synonym: bglu_2g07710

Alternate gene names: 238024192

Gene position: 934460-935239 (Clockwise)

Preceding gene: 238024191

Following gene: 238024193

Centisome position: 33.05

GC content: 72.95

Gene sequence:

>780_bases
TTGAGAAGAACGATCTTCACCGAAACCACCACGTACCGTCGCGCCGTCTCGCGCGCGATCGGGCTTGCGGCCGGCGCGGC
GCTCGTCGGCGGCTGCACGATGACGCCATGGACGGACAACTGGCAGCCGTCCCAGCAAGCGCAGCCGAGCCGCCAGTCGC
AGGCGGGCGTGCTGGCCGGCTACTACCGCGTGAACCCCGGCGACACGCTGCCCGGCATCGCGGCGGGCTTCGGCCAGCGG
GTGCAGGACCTGGCGAACTGGAACCACATCGCGTCCACCGACATGCTGACGCCGGGCCAGGTGCTGCGCGTCGCGCCGCC
GCCCGGCACGACCGCGGTCACCTCGCCGGTGCCGGGCGGCACCTCGCCTTCGGCGTCGGCGCTGCCGGGCACGCCGCCCG
CCGAGGCGCAGCCGATGCTGGCGTGGCCCGCGCAGGGCACCGTCACCTCGCGCTTCATCCCGGGCCGCACGCGCGGCATC
ACCATCACCTCCACCGGCGACAAGACCGTGCGCGCGGCGGCGGCGGGGCGCGTGGTCTATGCCGGCAACGGCGTGGCGAA
GTACGGCCCGCTCGTGATCCTGAAGCACGAGAGCGGGCTGATTACCGCCTACGGCCACAACGGCAGGCTGCTCGTGAACG
ACGGTGACGCCGTCAGCGCCGGCCAGCCCGTCGCCGAGATGCAGACCGATGCGGACGGCCGCTCCTCGTTCGACTTCGAG
GTGCGCCAGGACGGCAAGCCCGTCGATCCGATGACGTTCCTGCCGCGCAACGGCGGCTGA

Upstream 100 bases:

>100_bases
TGACGGTCCCAGTCCTCGGGACCGGCCCGTATCGGGCCAGGCGGCGGGCGGCGTTGGCGATGCGCGGCCCGCCGCCGCGA
AGCGAAACTAGGGAGGCAGC

Downstream 100 bases:

>100_bases
GGCCGCCGGCCCGCAGGCGGCGCGCTCCCGGCCCGGGAGGCGCCGCGTTGCACCGGACGCCGCGCGCGATGCGCGGCGTT
TTTGTTTGCTGCGGCGGGCG

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRRTIFTETTTYRRAVSRAIGLAAGAALVGGCTMTPWTDNWQPSQQAQPSRQSQAGVLAGYYRVNPGDTLPGIAAGFGQR
VQDLANWNHIASTDMLTPGQVLRVAPPPGTTAVTSPVPGGTSPSASALPGTPPAEAQPMLAWPAQGTVTSRFIPGRTRGI
TITSTGDKTVRAAAAGRVVYAGNGVAKYGPLVILKHESGLITAYGHNGRLLVNDGDAVSAGQPVAEMQTDADGRSSFDFE
VRQDGKPVDPMTFLPRNGG

Sequences:

>Translated_259_residues
MRRTIFTETTTYRRAVSRAIGLAAGAALVGGCTMTPWTDNWQPSQQAQPSRQSQAGVLAGYYRVNPGDTLPGIAAGFGQR
VQDLANWNHIASTDMLTPGQVLRVAPPPGTTAVTSPVPGGTSPSASALPGTPPAEAQPMLAWPAQGTVTSRFIPGRTRGI
TITSTGDKTVRAAAAGRVVYAGNGVAKYGPLVILKHESGLITAYGHNGRLLVNDGDAVSAGQPVAEMQTDADGRSSFDFE
VRQDGKPVDPMTFLPRNGG
>Mature_259_residues
MRRTIFTETTTYRRAVSRAIGLAAGAALVGGCTMTPWTDNWQPSQQAQPSRQSQAGVLAGYYRVNPGDTLPGIAAGFGQR
VQDLANWNHIASTDMLTPGQVLRVAPPPGTTAVTSPVPGGTSPSASALPGTPPAEAQPMLAWPAQGTVTSRFIPGRTRGI
TITSTGDKTVRAAAAGRVVYAGNGVAKYGPLVILKHESGLITAYGHNGRLLVNDGDAVSAGQPVAEMQTDADGRSSFDFE
VRQDGKPVDPMTFLPRNGG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=218, Percent_Identity=32.5688073394495, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789099, Length=256, Percent_Identity=29.296875, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=35.5371900826446, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26952; Mature: 26952

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTIFTETTTYRRAVSRAIGLAAGAALVGGCTMTPWTDNWQPSQQAQPSRQSQAGVLAG
CCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHCCCCCCCCCCEEEE
YYRVNPGDTLPGIAAGFGQRVQDLANWNHIASTDMLTPGQVLRVAPPPGTTAVTSPVPGG
EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCC
TSPSASALPGTPPAEAQPMLAWPAQGTVTSRFIPGRTRGITITSTGDKTVRAAAAGRVVY
CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCEEEHHHCCEEEE
AGNGVAKYGPLVILKHESGLITAYGHNGRLLVNDGDAVSAGQPVAEMQTDADGRSSFDFE
ECCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCEE
VRQDGKPVDPMTFLPRNGG
ECCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MRRTIFTETTTYRRAVSRAIGLAAGAALVGGCTMTPWTDNWQPSQQAQPSRQSQAGVLAG
CCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHCCCCCCCCCCEEEE
YYRVNPGDTLPGIAAGFGQRVQDLANWNHIASTDMLTPGQVLRVAPPPGTTAVTSPVPGG
EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCC
TSPSASALPGTPPAEAQPMLAWPAQGTVTSRFIPGRTRGITITSTGDKTVRAAAAGRVVY
CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCEEEHHHCCEEEE
AGNGVAKYGPLVILKHESGLITAYGHNGRLLVNDGDAVSAGQPVAEMQTDADGRSSFDFE
ECCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCEE
VRQDGKPVDPMTFLPRNGG
ECCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]