| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024170
Identifier: 238024170
GI number: 238024170
Start: 898308
End: 900488
Strand: Reverse
Name: 238024170
Synonym: bglu_2g07480
Alternate gene names: NA
Gene position: 900488-898308 (Counterclockwise)
Preceding gene: 238024172
Following gene: 238024169
Centisome position: 31.85
GC content: 66.12
Gene sequence:
>2181_bases ATGAGTGAAAGCGTGCAGAAGAAGCTCCTGCGTATTCGCCCTCCCCGGGTGAGGATCACGTACGACGTGGAGACGGGTGG CGCCATCGAGAAGACGGAGCTGCCGTTCATCGTCGGCATCCTGGCCGACCTGAAGGGCGAGCGCGAAGATGCGGAACACT ATCCGTCGCTGAAGGAGCGGTCGATGATCGAGATCGATCGCGACAACTTCGACGACGTGATGAAGAAGATCCAGCCGCGC GCCACCTTCACGCAGCTGAAGCAGGACGACGCGGCGCTGAAGGCTCTGCTCGTGCAGGACGGCGACAACGCGCTGATCTT CCCGAACATGGAAGCGTTCGAACCGCTGAAGGTGATCAAGGCGCTGCCGTCGCTGAACGACATCTACGTCAACCGCGGCA AGATCCGCGACCTGCAGGCGCGCGCGGAAACGAGCGACCCCGTCAGCAAGGTGCTCGATGCGATGATCCAAGGCGCGGTG CTCGGCCAGGCCGCCGTGGCGGCCCAGCCCGCGGTGCCCGATCAGCCCGAGGTGCCAGCCGTGCCGGCCGTGCCGGCCGA CGGCGACAAGCCGGCCGTCGAGGCGGTGCCGGGCAAGCCCGCCGTCAAGGGCACGCCGGCGGTGGCGGCCAAGGATGCCG TGCCGGCCCTGCAGGACTCGGCCGTCGAGACCGCGCTCGCGGCGCTCGCCGATCTGCGCAAGAAGGACGTCGCGGTGCCC GACGATCTGAACGTCACGAAGTTCGCGGAGCAGTTCAAGCTCTTCTACGTCGCCAGCAACGACGACGTGGCGAAGATCAC CGAGGCGCGCAAGCGCGGCGCGATTGCCGTGATCGACGCGCTGATCGCCGAGATCGACAAGCAGCTCAGCGACGCGGTGT CGAGCATCATGCACTGCGACAGCTTCAAGACGATGGAGGCGACCTGGCGCGGCCTCAACTACCTGGTGATGAACACCGAG ACCAGCACGACGCTGAAGCTGCGCGTGTTCGACGCCCAGAAGGAAGAGCTGCGCAGCGACATGGTGAAGGCGGTCGAGTT CGACCAGAGCGCCCTCTTCAAGATGATCTACGAGGCCGAGTACGGCACCTACGGCGGCAAGCCGTACAGCCTGCTGGTGG GCGACTACGCGATCGCCAAGACCCCGCAGGACATCGAGTTCGTCACCAAGATGGCCGAGGTGGCCGCCGCCGCCCACGCG CCGTTCCTCGCGCAGGCATCGACCGATCTGTTCAGCCTCGCGAACTTCGGCGAGCTCGACAAGCCGCGCGATCTGAAGAA GATCTTCGAGGGCGAGGAGTACGAGGCATGGCGCGAATTCCGCGACCTCGAGGACGCGCGCTACGTCACGCTCGCGCTGC CGCGCGCGCTGCTGCGCCTGCCCTACGGCATGCCCACCAAGCGCAGCACCACGCCGTGCGACGGCATCAACTTCGACGAG CGCATCGGCGCCTCGGGCAAGGACGACACGCTCTACGGCAAGGACGCCAGCGAGCCGCTCAGCTACGCGAAGCCGGCCCC GGACCATCTGCTGTGGGGCAACCCGGCCTACCTGCTCGCGCAGCGCATCACCAACGCGTTCGCGCACTACAGCTGGACGG CGGCGATCCGCGGCGAGGAAGGCGGCGGCCTGGTGGAGAACCTGCCGCTCTATACCTACACCTCCGACAACGGCAGCACC GAGCTGCTCTGCCCGACCGAGATCTCGATCACCGATCGCCGCGAGAAGGAGCTCAACGACCTCGGCTTCATCTCGCTCTG CCATTGCAAGGGCACCGGCAAGGCGGCGTTCTTCGGCGGCCAGACCACCAACCAGCCGAAGAAGTACTTCTCGGACGCGG CCAACGCCAACGCCCGGATCTCCGCGCTGCTGCCGTACATGCTCGCCGCGTCGCGCTTCGCGCATTACATCAAGGTCATC ATGCGTCAGAAGATCGGCTCGTTCCAGACCCGCGGCAACGTCGAGGACTACCTCAACTCGTGGATCTCGAACTACGTGCT GCTCGACGACAACGCCTCGCAGGACGCCAAGGCCGCCTACCCGCTGCGTGAAGCGAAGGTGCAGGTGAGCGAGGTGCCGG GCGAGCCGGGCTCGTACCGCGCCGTGGTGTTCCTCAAGCCGCACTTCCAGCTCGAGGAGCTGACGACTTCGATCCGGCTC GTGGCCAACCTGCCGAAATAA
Upstream 100 bases:
>100_bases GCGCCGGGCCGGGGTCGTGCAATCACGGCGCGCTGAGCATGCTCATCGCCGGACCAATCGAACGTTTCACAAGAGTCAAC AACGAACGCGAGGTGAGATC
Downstream 100 bases:
>100_bases CTTCCGTATCTTTCATTTTCCTAGGAGTGGTCATGGATCTGATTCTCTTCCAGCCGGGCGATCAAAGCATCATGAACAGC GACGGCAGCGAGATCGACAA
Product: EvpB/family type VI secretion protein
Products: NA
Alternate protein names: EvpB Family Type VI Secretion Protein; Type VI Secretion Protein EvpB/Family; Type VI Secretion; Type VI Secretion System Protein; T6ss B; Protein ImpC; EvpB/Family Type VI Secretion Protein; Replication/Virulence Associated Protein; T6ss S; Protein ImpD; Virulence-Island/Protein Involved In Nitrogen Fixation; Cytoplasmic Protein SciI; Protein ImpB; Intracellular Growth Locus Subunit B; Conserved Protein; Cytoplasmic Protein SciH; Type VI Secretion System Protein EvpB
Number of amino acids: Translated: 726; Mature: 725
Protein sequence:
>726_residues MSESVQKKLLRIRPPRVRITYDVETGGAIEKTELPFIVGILADLKGEREDAEHYPSLKERSMIEIDRDNFDDVMKKIQPR ATFTQLKQDDAALKALLVQDGDNALIFPNMEAFEPLKVIKALPSLNDIYVNRGKIRDLQARAETSDPVSKVLDAMIQGAV LGQAAVAAQPAVPDQPEVPAVPAVPADGDKPAVEAVPGKPAVKGTPAVAAKDAVPALQDSAVETALAALADLRKKDVAVP DDLNVTKFAEQFKLFYVASNDDVAKITEARKRGAIAVIDALIAEIDKQLSDAVSSIMHCDSFKTMEATWRGLNYLVMNTE TSTTLKLRVFDAQKEELRSDMVKAVEFDQSALFKMIYEAEYGTYGGKPYSLLVGDYAIAKTPQDIEFVTKMAEVAAAAHA PFLAQASTDLFSLANFGELDKPRDLKKIFEGEEYEAWREFRDLEDARYVTLALPRALLRLPYGMPTKRSTTPCDGINFDE RIGASGKDDTLYGKDASEPLSYAKPAPDHLLWGNPAYLLAQRITNAFAHYSWTAAIRGEEGGGLVENLPLYTYTSDNGST ELLCPTEISITDRREKELNDLGFISLCHCKGTGKAAFFGGQTTNQPKKYFSDAANANARISALLPYMLAASRFAHYIKVI MRQKIGSFQTRGNVEDYLNSWISNYVLLDDNASQDAKAAYPLREAKVQVSEVPGEPGSYRAVVFLKPHFQLEELTTSIRL VANLPK
Sequences:
>Translated_726_residues MSESVQKKLLRIRPPRVRITYDVETGGAIEKTELPFIVGILADLKGEREDAEHYPSLKERSMIEIDRDNFDDVMKKIQPR ATFTQLKQDDAALKALLVQDGDNALIFPNMEAFEPLKVIKALPSLNDIYVNRGKIRDLQARAETSDPVSKVLDAMIQGAV LGQAAVAAQPAVPDQPEVPAVPAVPADGDKPAVEAVPGKPAVKGTPAVAAKDAVPALQDSAVETALAALADLRKKDVAVP DDLNVTKFAEQFKLFYVASNDDVAKITEARKRGAIAVIDALIAEIDKQLSDAVSSIMHCDSFKTMEATWRGLNYLVMNTE TSTTLKLRVFDAQKEELRSDMVKAVEFDQSALFKMIYEAEYGTYGGKPYSLLVGDYAIAKTPQDIEFVTKMAEVAAAAHA PFLAQASTDLFSLANFGELDKPRDLKKIFEGEEYEAWREFRDLEDARYVTLALPRALLRLPYGMPTKRSTTPCDGINFDE RIGASGKDDTLYGKDASEPLSYAKPAPDHLLWGNPAYLLAQRITNAFAHYSWTAAIRGEEGGGLVENLPLYTYTSDNGST ELLCPTEISITDRREKELNDLGFISLCHCKGTGKAAFFGGQTTNQPKKYFSDAANANARISALLPYMLAASRFAHYIKVI MRQKIGSFQTRGNVEDYLNSWISNYVLLDDNASQDAKAAYPLREAKVQVSEVPGEPGSYRAVVFLKPHFQLEELTTSIRL VANLPK >Mature_725_residues SESVQKKLLRIRPPRVRITYDVETGGAIEKTELPFIVGILADLKGEREDAEHYPSLKERSMIEIDRDNFDDVMKKIQPRA TFTQLKQDDAALKALLVQDGDNALIFPNMEAFEPLKVIKALPSLNDIYVNRGKIRDLQARAETSDPVSKVLDAMIQGAVL GQAAVAAQPAVPDQPEVPAVPAVPADGDKPAVEAVPGKPAVKGTPAVAAKDAVPALQDSAVETALAALADLRKKDVAVPD DLNVTKFAEQFKLFYVASNDDVAKITEARKRGAIAVIDALIAEIDKQLSDAVSSIMHCDSFKTMEATWRGLNYLVMNTET STTLKLRVFDAQKEELRSDMVKAVEFDQSALFKMIYEAEYGTYGGKPYSLLVGDYAIAKTPQDIEFVTKMAEVAAAAHAP FLAQASTDLFSLANFGELDKPRDLKKIFEGEEYEAWREFRDLEDARYVTLALPRALLRLPYGMPTKRSTTPCDGINFDER IGASGKDDTLYGKDASEPLSYAKPAPDHLLWGNPAYLLAQRITNAFAHYSWTAAIRGEEGGGLVENLPLYTYTSDNGSTE LLCPTEISITDRREKELNDLGFISLCHCKGTGKAAFFGGQTTNQPKKYFSDAANANARISALLPYMLAASRFAHYIKVIM RQKIGSFQTRGNVEDYLNSWISNYVLLDDNASQDAKAAYPLREAKVQVSEVPGEPGSYRAVVFLKPHFQLEELTTSIRLV ANLPK
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79926; Mature: 79794
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00449 ATPASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESVQKKLLRIRPPRVRITYDVETGGAIEKTELPFIVGILADLKGEREDAEHYPSLKER CCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHC SMIEIDRDNFDDVMKKIQPRATFTQLKQDDAALKALLVQDGDNALIFPNMEAFEPLKVIK CEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHHHH ALPSLNDIYVNRGKIRDLQARAETSDPVSKVLDAMIQGAVLGQAAVAAQPAVPDQPEVPA HCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VPAVPADGDKPAVEAVPGKPAVKGTPAVAAKDAVPALQDSAVETALAALADLRKKDVAVP CCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC DDLNVTKFAEQFKLFYVASNDDVAKITEARKRGAIAVIDALIAEIDKQLSDAVSSIMHCD CCCCHHHHHHCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC SFKTMEATWRGLNYLVMNTETSTTLKLRVFDAQKEELRSDMVKAVEFDQSALFKMIYEAE CCHHHHHHHCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHC YGTYGGKPYSLLVGDYAIAKTPQDIEFVTKMAEVAAAAHAPFLAQASTDLFSLANFGELD CCCCCCCEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCC KPRDLKKIFEGEEYEAWREFRDLEDARYVTLALPRALLRLPYGMPTKRSTTPCDGINFDE CCHHHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH RIGASGKDDTLYGKDASEPLSYAKPAPDHLLWGNPAYLLAQRITNAFAHYSWTAAIRGEE HCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCHHHHHHHHHHHHHHHCEEEEEEECCC GGGLVENLPLYTYTSDNGSTELLCPTEISITDRREKELNDLGFISLCHCKGTGKAAFFGG CCCCHHCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEECC QTTNQPKKYFSDAANANARISALLPYMLAASRFAHYIKVIMRQKIGSFQTRGNVEDYLNS CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH WISNYVLLDDNASQDAKAAYPLREAKVQVSEVPGEPGSYRAVVFLKPHFQLEELTTSIRL HHHCEEEECCCCCCCCHHHCCHHHHCEEHEECCCCCCCEEEEEEECCCCCHHHHHHHHHH VANLPK EECCCC >Mature Secondary Structure SESVQKKLLRIRPPRVRITYDVETGGAIEKTELPFIVGILADLKGEREDAEHYPSLKER CHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHC SMIEIDRDNFDDVMKKIQPRATFTQLKQDDAALKALLVQDGDNALIFPNMEAFEPLKVIK CEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHHHH ALPSLNDIYVNRGKIRDLQARAETSDPVSKVLDAMIQGAVLGQAAVAAQPAVPDQPEVPA HCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VPAVPADGDKPAVEAVPGKPAVKGTPAVAAKDAVPALQDSAVETALAALADLRKKDVAVP CCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC DDLNVTKFAEQFKLFYVASNDDVAKITEARKRGAIAVIDALIAEIDKQLSDAVSSIMHCD CCCCHHHHHHCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC SFKTMEATWRGLNYLVMNTETSTTLKLRVFDAQKEELRSDMVKAVEFDQSALFKMIYEAE CCHHHHHHHCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHC YGTYGGKPYSLLVGDYAIAKTPQDIEFVTKMAEVAAAAHAPFLAQASTDLFSLANFGELD CCCCCCCEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCC KPRDLKKIFEGEEYEAWREFRDLEDARYVTLALPRALLRLPYGMPTKRSTTPCDGINFDE CCHHHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH RIGASGKDDTLYGKDASEPLSYAKPAPDHLLWGNPAYLLAQRITNAFAHYSWTAAIRGEE HCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCHHHHHHHHHHHHHHHCEEEEEEECCC GGGLVENLPLYTYTSDNGSTELLCPTEISITDRREKELNDLGFISLCHCKGTGKAAFFGG CCCCHHCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEECC QTTNQPKKYFSDAANANARISALLPYMLAASRFAHYIKVIMRQKIGSFQTRGNVEDYLNS CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH WISNYVLLDDNASQDAKAAYPLREAKVQVSEVPGEPGSYRAVVFLKPHFQLEELTTSIRL HHHCEEEECCCCCCCCHHHCCHHHHCEEHEECCCCCCCEEEEEEECCCCCHHHHHHHHHH VANLPK EECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA