| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024158
Identifier: 238024158
GI number: 238024158
Start: 884185
End: 884964
Strand: Reverse
Name: 238024158
Synonym: bglu_2g07360
Alternate gene names: NA
Gene position: 884964-884185 (Counterclockwise)
Preceding gene: 238024159
Following gene: 238024157
Centisome position: 31.3
GC content: 71.54
Gene sequence:
>780_bases ATGCGTGACGCCCCGCACTGGCCGCAGCCGCATCCGGGCACGCCCGATCTGGTGGCGCGCTTCGCCGACTTCTACCAGGA GCTGGCCGCCATCAAGGCCGCCCAGACGGGCGGCTGGCTGGCCGTCTATCTGGCCGGCGACGGCGCGCCCCAGCCCGTCA CCGGCAGCGAGTTCGCCAAGCGCGTGAGCGCGCGGCTGCTCGCCCTGCTGCAACGCCAGGAGCGCCGCCACGCCGACGAG GCCGACACCGCGGCCGGGCGCGCGGAGCGGCAGGCGCGCTACCTGATGGCGGCGCTCGCCGACGAGGTGCTGATCTTCGA GCTCGACTGGCCCGGGCGCGACGCCTGGCTGCCGGTGCTGCTGGAGCAGGCGATGTTCGGATCGAGCAACGCGGGCTCGC GGTTCTTCTCGATGGCCGAGCAGCTGATCCAGGACACCGCGCGCACCGCGCTGCAAGCCGAGCTCGCCTCGGTGTTCCTG CTCGCGATGGAGCTGGGCTTCAAGGGCCGCTACCGCGCGCGCCAGGCGCAGCCGCAGCTGGAACGGATCCGCGGCCAGCT CTACCAGGTCGTGTTCGCCGCCAGCGGCAAGCTCGACGACGAGCAGCCGGCATTCGCCGAGGCCTACGCGTATCCGCTCA CGGGCCGCCGCGACGAGCGCCTCGCGCCGCTGTCGCCGTGGCGCAATCTCGGGCTCTACGGGTTGATCGGCTACCTCGTG CTGTCGGTGATCGCGTGGTTCGTGCTGATGCACCCGTTCGAACATTATCTGAATGGCTAG
Upstream 100 bases:
>100_bases CGCAAGAACGACGGCCTGCCGGCCGCGATCGTGCTGTATCGCCGCAAGCAGAAGAACGGCGCGAGCGCCGGCGCCGCGCC GGCGCCGTCCGGGGACCAGC
Downstream 100 bases:
>100_bases TCACGGCCTGAGCAGGAGCGCATTCGTGGACGCAATACTGAAATCGACCGCCTGGCTGAAGGCGCAGACCGGCTGGGCAC CCGCTGCCGGCACGCTGAAG
Product: type IV / VI secretion system protein DotU
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MRDAPHWPQPHPGTPDLVARFADFYQELAAIKAAQTGGWLAVYLAGDGAPQPVTGSEFAKRVSARLLALLQRQERRHADE ADTAAGRAERQARYLMAALADEVLIFELDWPGRDAWLPVLLEQAMFGSSNAGSRFFSMAEQLIQDTARTALQAELASVFL LAMELGFKGRYRARQAQPQLERIRGQLYQVVFAASGKLDDEQPAFAEAYAYPLTGRRDERLAPLSPWRNLGLYGLIGYLV LSVIAWFVLMHPFEHYLNG
Sequences:
>Translated_259_residues MRDAPHWPQPHPGTPDLVARFADFYQELAAIKAAQTGGWLAVYLAGDGAPQPVTGSEFAKRVSARLLALLQRQERRHADE ADTAAGRAERQARYLMAALADEVLIFELDWPGRDAWLPVLLEQAMFGSSNAGSRFFSMAEQLIQDTARTALQAELASVFL LAMELGFKGRYRARQAQPQLERIRGQLYQVVFAASGKLDDEQPAFAEAYAYPLTGRRDERLAPLSPWRNLGLYGLIGYLV LSVIAWFVLMHPFEHYLNG >Mature_259_residues MRDAPHWPQPHPGTPDLVARFADFYQELAAIKAAQTGGWLAVYLAGDGAPQPVTGSEFAKRVSARLLALLQRQERRHADE ADTAAGRAERQARYLMAALADEVLIFELDWPGRDAWLPVLLEQAMFGSSNAGSRFFSMAEQLIQDTARTALQAELASVFL LAMELGFKGRYRARQAQPQLERIRGQLYQVVFAASGKLDDEQPAFAEAYAYPLTGRRDERLAPLSPWRNLGLYGLIGYLV LSVIAWFVLMHPFEHYLNG
Specific function: Unknown
COG id: COG3455
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28934; Mature: 28934
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDAPHWPQPHPGTPDLVARFADFYQELAAIKAAQTGGWLAVYLAGDGAPQPVTGSEFAK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHH RVSARLLALLQRQERRHADEADTAAGRAERQARYLMAALADEVLIFELDWPGRDAWLPVL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH LEQAMFGSSNAGSRFFSMAEQLIQDTARTALQAELASVFLLAMELGFKGRYRARQAQPQL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHH ERIRGQLYQVVFAASGKLDDEQPAFAEAYAYPLTGRRDERLAPLSPWRNLGLYGLIGYLV HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHH LSVIAWFVLMHPFEHYLNG HHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRDAPHWPQPHPGTPDLVARFADFYQELAAIKAAQTGGWLAVYLAGDGAPQPVTGSEFAK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHH RVSARLLALLQRQERRHADEADTAAGRAERQARYLMAALADEVLIFELDWPGRDAWLPVL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH LEQAMFGSSNAGSRFFSMAEQLIQDTARTALQAELASVFLLAMELGFKGRYRARQAQPQL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHH ERIRGQLYQVVFAASGKLDDEQPAFAEAYAYPLTGRRDERLAPLSPWRNLGLYGLIGYLV HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHH LSVIAWFVLMHPFEHYLNG HHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA