Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

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The map label for this gene is 238024159

Identifier: 238024159

GI number: 238024159

Start: 884957

End: 886405

Strand: Reverse

Name: 238024159

Synonym: bglu_2g07370

Alternate gene names: NA

Gene position: 886405-884957 (Counterclockwise)

Preceding gene: 238024160

Following gene: 238024158

Centisome position: 31.35

GC content: 72.26

Gene sequence:

>1449_bases
ATGACGCCCAACGCCCCCCTCCCCGACGCAGTGCAATGGTCGGAAGGCATGATGCTCTCGCCCCAGCATCTGCAACAGAA
CGACCGCTACTGGCACGCGCATCTGCGCCATCGCCTGCAGGCCGTGGCGCCGCACTACTGGGGCGTGCTGACGCTGCGCT
TCGAGATCGTCAAGGAGATCCTCAGCATCGGCGAGCTCGAATGCATCCTGCCCGACGGGCTGCTGGTCGCGTTCCCCGGC
GGCCTGCCGCGCAATCCGCCCGGCAACGTCGAGATCGACGTCGGCGCGGCCTGCCGCAGCGGCGAGGCGCCGGTCAAGGT
GTGGTGCGTGGTCAACCCGCGCGGCTCGCATGCCGCCGTGCAGGACAGCCAGGAGCGCCGCTACAACTCGGTGCTCGACG
AGCCCAGCGTGGACGAGAACACCGGCGACGGCGCGCTGTCGCTGCCGCGCCTGCAGGTGCGCTTCCAGCTCCACCTCGGC
ACGATCTCGCCGGCGCCGCAGAGCGCCGTGCCGCTGCTCGAGTTCGTGCGCGGCGACAACCAGCAGCTGCAGGTCACCGC
CTACCACGCGCCGATGCTGCGCATCGAGGCGGCCGACTGCCTCGGCCAGACGAGCCTCTGGCGCCAGCTGCACGCGTTCC
ACGACCGCCTGTGGGACAAGCTCTCGCAGCTCGCCGAGCCGGGCAGGTCCGGCGACACCGAGGACACCGCCGGCAACGAG
CGCCGCCAGCATCTGGCCGCCGCGCGCCAGATCGGCGCGTGCCTGCCGCCGCTCTCCACGCTGCTGCACGGGCGCACCCA
TCCCGAGGCGCTCTACCAGGCGCTCGCGCGGATCGTCGGCGCGGTGTCGGGCATCGGCCCCAACCCGCTGCCGCTGCTGA
TGAAGCCGTATCAGCACGACGACTGCCAGCCGCAGTTCCAGCAGGCCATGGCGTTCGTCGCCAACCGGCTGGACACGGTC
GATACGCGCTACGAGACGCTCGCGTTCCTGCGCACCGACCAGCACGACGCCAGCCTGCCCGAGGCCTGCTTCGAGCGCCG
CCTGCCGGCCGGCATGGGCGACGACCTGATCGTCGAGCTCGAGCCGCGCGAGGCGCAGACGCCCTCGCAACTGCAGGCGT
GGCTCGACGAGGCGATGATCGCCGACGCCGCGCTGATGCCGCTGCTGCGCCGCGCGCGGGTGGCCGGCGCGACGGCGCGG
CCGTTGCAGCCGCACGAGATCGAGCGCGAGAAGCTGCGCCCGCAGGCCTGCCTGTTCTGGGTGAGGAACCAGCCGCTCGC
GCTCGACGACCAGGGCGCGCAGACCGCGTTCGGCGACAGCGCGATGCTGCAGATCGTCGGCCGCAAGAACGACGGCCTGC
CGGCCGCGATCGTGCTGTATCGCCGCAAGCAGAAGAACGGCGCGAGCGCCGGCGCCGCGCCGGCGCCGTCCGGGGACCAG
CATGCGTGA

Upstream 100 bases:

>100_bases
CCCTACCAGAACGTAACGATCTGGCTCACGCCGACGACGGTGCTGTACAAGTCGCAGTGACGCCGCCCGCACCCGACACG
AGCCACGGAACCCACAGGCC

Downstream 100 bases:

>100_bases
CGCCCCGCACTGGCCGCAGCCGCATCCGGGCACGCCCGATCTGGTGGCGCGCTTCGCCGACTTCTACCAGGAGCTGGCCG
CCATCAAGGCCGCCCAGACG

Product: type VI secretion protein

Products: NA

Alternate protein names: T6ss M

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEILSIGELECILPDGLLVAFPG
GLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAVQDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLG
TISPAPQSAVPLLEFVRGDNQQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE
RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHDDCQPQFQQAMAFVANRLDTV
DTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVELEPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATAR
PLQPHEIEREKLRPQACLFWVRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ
HA

Sequences:

>Translated_482_residues
MTPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEILSIGELECILPDGLLVAFPG
GLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAVQDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLG
TISPAPQSAVPLLEFVRGDNQQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE
RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHDDCQPQFQQAMAFVANRLDTV
DTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVELEPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATAR
PLQPHEIEREKLRPQACLFWVRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ
HA
>Mature_481_residues
TPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEILSIGELECILPDGLLVAFPGG
LPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAVQDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLGT
ISPAPQSAVPLLEFVRGDNQQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNER
RQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHDDCQPQFQQAMAFVANRLDTVD
TRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVELEPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATARP
LQPHEIEREKLRPQACLFWVRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQH
A

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53072; Mature: 52941

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEI
CCCCCCCCCCCCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LSIGELECILPDGLLVAFPGGLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAV
HCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHH
QDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLGTISPAPQSAVPLLEFVRGDN
CCHHHHHHHHHCCCCCCCCCCCCCCEECCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCC
QQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE
CEEEEEEECCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHD
HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC
DCQPQFQQAMAFVANRLDTVDTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEE
EPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATARPLQPHEIEREKLRPQACLFW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHEEEE
VRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ
ECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCEEHEEHHHCCCCCCCCCCCCCCCCC
HA
CC
>Mature Secondary Structure 
TPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEI
CCCCCCCCCCCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LSIGELECILPDGLLVAFPGGLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAV
HCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHH
QDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLGTISPAPQSAVPLLEFVRGDN
CCHHHHHHHHHCCCCCCCCCCCCCCEECCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCC
QQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE
CEEEEEEECCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHD
HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC
DCQPQFQQAMAFVANRLDTVDTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEE
EPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATARPLQPHEIEREKLRPQACLFW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHEEEE
VRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ
ECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCEEHEEHHHCCCCCCCCCCCCCCCCC
HA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA