| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is slyA [C]
Identifier: 238024090
GI number: 238024090
Start: 783151
End: 783624
Strand: Direct
Name: slyA [C]
Synonym: bglu_2g06540
Alternate gene names: 238024090
Gene position: 783151-783624 (Clockwise)
Preceding gene: 238024087
Following gene: 238024095
Centisome position: 27.7
GC content: 60.76
Gene sequence:
>474_bases ATGTCGACCAAGTCCGTTTCCAATAACTCCGCCGACGATCTCGCGGATCGGGTCGACCAGTCGGAATTGCTCGATCTTCT CGGCTACAACATCCGCCGCGCCTATCTCGTCATCCAGTCGACCTTCGACGCGCAGATGGAAAAGCTCGAACTGCGTCAGG CCGATTTCGCGGTACTGTCTACGTTGCGCCATAACCCAGGCATCAACCAGAAGGCACTTGCCGACGCACTGGCCATTGCA CCGCCCAACCTGGCCACGTTGCTGGACCGGCTCGAGTCGCGTGGCCTGCTGACACGACAGCGCAGCCTCGACGACAGACG CATTCAGCATGTCTCGCTGACTCCGCAGGGCACGCGCCTGCATGGCCAGGCACTCAAGTCCGCCCAGAAGGCGGACGAGG TTGCCGTGCAGATGCTTTCCGGTGCCGGGCGCGAACAACTCAAATCCCTCCTGACAAAAATTTTCGCCGGCTGA
Upstream 100 bases:
>100_bases GCATACGGGCGGCGTGCTCCGCCCGGAATTCCACCTGAAAATACCTTCCGTCGACGTGCTATGATCCAAGACGCCCCTTA CAGAGAATTGGCCCATTGCA
Downstream 100 bases:
>100_bases ATGGTGGGAAGCCGGCCGGGGCTTCGACCGCGCCCCGGCCGGTTCAAGAACGCTCAGTTCGACGCGGGTTCGACCAGCAT CAGCGCATCGAGCGCAAGCG
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Transcriptional Regulator; MarR Family Regulatory Protein; Transcriptional Regulator Marr Family Protein; Transcriptional Regulatory Protein; MarR Family Transcriptional Regulatory Protein; Regulatory Protein MarR; MarR Family Transcription Regulator Protein; Transcriptional Regulator Protein MarR Family; Transcriptional Regulator MarR Family Protein
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MSTKSVSNNSADDLADRVDQSELLDLLGYNIRRAYLVIQSTFDAQMEKLELRQADFAVLSTLRHNPGINQKALADALAIA PPNLATLLDRLESRGLLTRQRSLDDRRIQHVSLTPQGTRLHGQALKSAQKADEVAVQMLSGAGREQLKSLLTKIFAG
Sequences:
>Translated_157_residues MSTKSVSNNSADDLADRVDQSELLDLLGYNIRRAYLVIQSTFDAQMEKLELRQADFAVLSTLRHNPGINQKALADALAIA PPNLATLLDRLESRGLLTRQRSLDDRRIQHVSLTPQGTRLHGQALKSAQKADEVAVQMLSGAGREQLKSLLTKIFAG >Mature_156_residues STKSVSNNSADDLADRVDQSELLDLLGYNIRRAYLVIQSTFDAQMEKLELRQADFAVLSTLRHNPGINQKALADALAIAP PNLATLLDRLESRGLLTRQRSLDDRRIQHVSLTPQGTRLHGQALKSAQKADEVAVQMLSGAGREQLKSLLTKIFAG
Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17277; Mature: 17146
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKSVSNNSADDLADRVDQSELLDLLGYNIRRAYLVIQSTFDAQMEKLELRQADFAVLS CCCCCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLRHNPGINQKALADALAIAPPNLATLLDRLESRGLLTRQRSLDDRRIQHVSLTPQGTRL HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCCCCCHH HGQALKSAQKADEVAVQMLSGAGREQLKSLLTKIFAG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure STKSVSNNSADDLADRVDQSELLDLLGYNIRRAYLVIQSTFDAQMEKLELRQADFAVLS CCCCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLRHNPGINQKALADALAIAPPNLATLLDRLESRGLLTRQRSLDDRRIQHVSLTPQGTRL HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCCCCCHH HGQALKSAQKADEVAVQMLSGAGREQLKSLLTKIFAG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA