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The map label for this gene is sdsB [H]

Identifier: 238023872

GI number: 238023872

Start: 492997

End: 493911

Strand: Direct

Name: sdsB [H]

Synonym: bglu_2g04110

Alternate gene names: 238023872

Gene position: 492997-493911 (Clockwise)

Preceding gene: 238023869

Following gene: 238023874

Centisome position: 17.44

GC content: 70.71

Gene sequence:

>915_bases
GTGCTGGGGAATCTGTCGACGCTGGATCTGCGCCTGATCCGGGTGTTTCTGGCGGTGGCCGACGCGGGCGGCGTGACGGC
CGCGCAGACGGTGCTCAACGTCGGGCAGTCCACCATCAGCGCGCAGCTGTCGTCGCTGGAGACGCGGCTCGGCTACCGGC
TCTGCGAGCGCGGCCGCAGCGGCTTTCGCCTCACTCCCAAGGGCGAGCGGTTCCGGAGCATGAGCCGCAAGCTGCTGGTG
GCGCTCGACGAGTTCGGCAGCGCCGCGCGCCACATGGACCGGCAACTGGTGGGCACGCTCAATATCGGCCTGATCGGGCA
CACGCCGATCAGCCAGAACGCGCGCATCGCCGAGGCGATCGCCGCGTTTCGCACGCGCGACGAGGCGGTGAAGTTCTCGA
TCTCGGTGCGCCCGCCCGGCGACCTCGAGGAAAAGCTGCTCGGCGACGAGATTCAGATCGCGGTCGGCTATTTCTGGCAT
CGCGTGCCGGTGCTCGACTACACGCCGCTCTTCGTCGAGCGGCAGGTGGCCTACTGCGGGCGCGGCCATCCGCTGTTCGA
GCGCGCGGGCGGGCTGTCGGCCGCCGACGCGGCCGGCCACGAATGGGCCTGGCGCACCTATCCGCTGCCGGAGGCGCAGC
TGTCCACCTCGCCCGACCGCGTGACGGGCACCGCCGACAACATGGAGGCGGTCGCGCTGCTGATCCTGTCGGGCCACCAC
CTCGGCTACCTGCCCGAGCATTTCGCCGCGCCTTACGTCGCCCAAGGGCTGCTCGCGCCGCTGAACCCCGAGCTGCTCAA
CTACGACGTGACGTTCCACATGGTCGTGGCGCGCCGCGCGAAGACCGACCCGATCGTGGCCGCGTTCCTCGAGGATCTCG
CCAGCGCCCACCTGCGCGTGCCCGCCGCGCGCTGA

Upstream 100 bases:

>100_bases
CGGCGGGACGCACAGTTGTACGCGTTTCGCCGCACAGGAAAAATGCCAAGGTTTCGACGTCAACATCGACTGAAATCGAT
GTAATCAAGGGGGGCAAGCG

Downstream 100 bases:

>100_bases
GCCGCGCGGCGGCGGCGCGGGCGCGCCGCGTGGGTCGGCCGTGCCGGCGGCCGCGGCGCCTGGCGCCCCGTCACGGCATC
GGCAGGCCCGCGTCGGCCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLGNLSTLDLRLIRVFLAVADAGGVTAAQTVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGERFRSMSRKLLV
ALDEFGSAARHMDRQLVGTLNIGLIGHTPISQNARIAEAIAAFRTRDEAVKFSISVRPPGDLEEKLLGDEIQIAVGYFWH
RVPVLDYTPLFVERQVAYCGRGHPLFERAGGLSAADAAGHEWAWRTYPLPEAQLSTSPDRVTGTADNMEAVALLILSGHH
LGYLPEHFAAPYVAQGLLAPLNPELLNYDVTFHMVVARRAKTDPIVAAFLEDLASAHLRVPAAR

Sequences:

>Translated_304_residues
MLGNLSTLDLRLIRVFLAVADAGGVTAAQTVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGERFRSMSRKLLV
ALDEFGSAARHMDRQLVGTLNIGLIGHTPISQNARIAEAIAAFRTRDEAVKFSISVRPPGDLEEKLLGDEIQIAVGYFWH
RVPVLDYTPLFVERQVAYCGRGHPLFERAGGLSAADAAGHEWAWRTYPLPEAQLSTSPDRVTGTADNMEAVALLILSGHH
LGYLPEHFAAPYVAQGLLAPLNPELLNYDVTFHMVVARRAKTDPIVAAFLEDLASAHLRVPAAR
>Mature_304_residues
MLGNLSTLDLRLIRVFLAVADAGGVTAAQTVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGERFRSMSRKLLV
ALDEFGSAARHMDRQLVGTLNIGLIGHTPISQNARIAEAIAAFRTRDEAVKFSISVRPPGDLEEKLLGDEIQIAVGYFWH
RVPVLDYTPLFVERQVAYCGRGHPLFERAGGLSAADAAGHEWAWRTYPLPEAQLSTSPDRVTGTADNMEAVALLILSGHH
LGYLPEHFAAPYVAQGLLAPLNPELLNYDVTFHMVVARRAKTDPIVAAFLEDLASAHLRVPAAR

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=178, Percent_Identity=30.8988764044944, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=191, Percent_Identity=27.7486910994764, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87081904, Length=186, Percent_Identity=27.9569892473118, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=25.7731958762887, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33201; Mature: 33201

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGNLSTLDLRLIRVFLAVADAGGVTAAQTVLNVGQSTISAQLSSLETRLGYRLCERGRS
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
GFRLTPKGERFRSMSRKLLVALDEFGSAARHMDRQLVGTLNIGLIGHTPISQNARIAEAI
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHH
AAFRTRDEAVKFSISVRPPGDLEEKLLGDEIQIAVGYFWHRVPVLDYTPLFVERQVAYCG
HHHHCCCCEEEEEEEECCCCCHHHHHCCCHHEEHHHHHHHHCCCCCCCHHHHHHHHHHHC
RGHPLFERAGGLSAADAAGHEWAWRTYPLPEAQLSTSPDRVTGTADNMEAVALLILSGHH
CCCHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCC
LGYLPEHFAAPYVAQGLLAPLNPELLNYDVTFHMVVARRAKTDPIVAAFLEDLASAHLRV
CCCCHHHHCCHHHHHCCCCCCCHHHEEECCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCC
PAAR
CCCC
>Mature Secondary Structure
MLGNLSTLDLRLIRVFLAVADAGGVTAAQTVLNVGQSTISAQLSSLETRLGYRLCERGRS
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
GFRLTPKGERFRSMSRKLLVALDEFGSAARHMDRQLVGTLNIGLIGHTPISQNARIAEAI
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHH
AAFRTRDEAVKFSISVRPPGDLEEKLLGDEIQIAVGYFWHRVPVLDYTPLFVERQVAYCG
HHHHCCCCEEEEEEEECCCCCHHHHHCCCHHEEHHHHHHHHCCCCCCCHHHHHHHHHHHC
RGHPLFERAGGLSAADAAGHEWAWRTYPLPEAQLSTSPDRVTGTADNMEAVALLILSGHH
CCCHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCC
LGYLPEHFAAPYVAQGLLAPLNPELLNYDVTFHMVVARRAKTDPIVAAFLEDLASAHLRV
CCCCHHHHCCHHHHHCCCCCCCHHHEEECCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCC
PAAR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]