| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is aroE [H]
Identifier: 238023848
GI number: 238023848
Start: 457915
End: 458769
Strand: Direct
Name: aroE [H]
Synonym: bglu_2g03870
Alternate gene names: 238023848
Gene position: 457915-458769 (Clockwise)
Preceding gene: 238023847
Following gene: 238023849
Centisome position: 16.2
GC content: 72.87
Gene sequence:
>855_bases ATGAGCGGCACGTCGTTTCTGATCGGCCTGATCGGGCAGGGCATCGGCGGCTCGCTGTCGCCGGCGATGCACGAGCGGGA AGGCGGCCTGCAGGGCTTCAACTATGTCTACCGGCGTCTCGACCTCGACGCGCTCGGCCTCACCGTGGACGCGCTGCCCG AGCTGCTCGACGCCGCCGAGCGGATGGGCTACGACGGCCTGAACATCACGCATCCGTGCAAGCAGCGCGTGATCGCGCAT CTCGACACGCTGTCGGACGACGCGCGCGCGCTCGGTGCCGTCAATACCGTGCGTTTCGCGGGCGGCAAGCGCAGCGGCCA CAACACCGACTGGTCCGGCTTCGCGAAGTCGTTCCGGCGCGGTCTGGCCGGCGCGCCGATGGAGCGCGTCGTGCAGCTCG GCGCGGGCGGCGCGGGCGCGGCGGTGGCGCATGCGGTGCTGATGCTCGGCGCGCAGGCGCTGACGTTGTTCGACGTCGAG CCCGCGCGGGCGGACTCGCTGGCGGCCGAGCTGCAGGCGCGCTTCCCGGCGGCGAGCGTGACGGCAGGCGGCGCGCTCGA CGCGGCGATGGCGTCGGCCACGGGCCTGATCCACGCGACGCCGACCGGCATGCTCAAGCATCCCGGGCTGCCGCTGCCGG CCCATCTGCTCGCGACGCGGCCGTGGGTGGCCGACATCGTCTACTTTCCGCTGGAGACCGAGCTGGTGCGCGTGGCGCGC GCGGCGGGCTGCCGGACGCTGCCGGGCGGCGGAATGGCCGTGTTCCAGGCCGTCGATGCGTTCGAGATCTTCACCGGCCG CGAGCCCGACGCCGAGCGCATGCTCGCGCATTTCGAGACCCTCGTCGCGCAGTAG
Upstream 100 bases:
>100_bases ATGTGTCGGCGGTGGCGCGCGGCGTGATCTGCGGCTGCGGCACGCAAGGCTACGAGTTCGCGCTGCAGCGGCTCGCGGCG CTGCTCGAGGAGACGGTGCG
Downstream 100 bases:
>100_bases GGCGAGCCGGCCGGGCTCGCCGTCGCCACCGTCGTTACCACTGCCGTCACCACAATAATCAGGAATCAGGAGACTACGAT GCAGCACTCGCCCCAACCGT
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MSGTSFLIGLIGQGIGGSLSPAMHEREGGLQGFNYVYRRLDLDALGLTVDALPELLDAAERMGYDGLNITHPCKQRVIAH LDTLSDDARALGAVNTVRFAGGKRSGHNTDWSGFAKSFRRGLAGAPMERVVQLGAGGAGAAVAHAVLMLGAQALTLFDVE PARADSLAAELQARFPAASVTAGGALDAAMASATGLIHATPTGMLKHPGLPLPAHLLATRPWVADIVYFPLETELVRVAR AAGCRTLPGGGMAVFQAVDAFEIFTGREPDAERMLAHFETLVAQ
Sequences:
>Translated_284_residues MSGTSFLIGLIGQGIGGSLSPAMHEREGGLQGFNYVYRRLDLDALGLTVDALPELLDAAERMGYDGLNITHPCKQRVIAH LDTLSDDARALGAVNTVRFAGGKRSGHNTDWSGFAKSFRRGLAGAPMERVVQLGAGGAGAAVAHAVLMLGAQALTLFDVE PARADSLAAELQARFPAASVTAGGALDAAMASATGLIHATPTGMLKHPGLPLPAHLLATRPWVADIVYFPLETELVRVAR AAGCRTLPGGGMAVFQAVDAFEIFTGREPDAERMLAHFETLVAQ >Mature_283_residues SGTSFLIGLIGQGIGGSLSPAMHEREGGLQGFNYVYRRLDLDALGLTVDALPELLDAAERMGYDGLNITHPCKQRVIAHL DTLSDDARALGAVNTVRFAGGKRSGHNTDWSGFAKSFRRGLAGAPMERVVQLGAGGAGAAVAHAVLMLGAQALTLFDVEP ARADSLAAELQARFPAASVTAGGALDAAMASATGLIHATPTGMLKHPGLPLPAHLLATRPWVADIVYFPLETELVRVARA AGCRTLPGGGMAVFQAVDAFEIFTGREPDAERMLAHFETLVAQ
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1787983, Length=271, Percent_Identity=28.4132841328413, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1789675, Length=282, Percent_Identity=28.0141843971631, Blast_Score=67, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320332, Length=277, Percent_Identity=25.2707581227437, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR013708 - InterPro: IPR022893 [H]
Pfam domain/function: PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 29663; Mature: 29532
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTSFLIGLIGQGIGGSLSPAMHEREGGLQGFNYVYRRLDLDALGLTVDALPELLDAAE CCCHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCHHHHHCCHHHHHHHHHHHH RMGYDGLNITHPCKQRVIAHLDTLSDDARALGAVNTVRFAGGKRSGHNTDWSGFAKSFRR HCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHH GLAGAPMERVVQLGAGGAGAAVAHAVLMLGAQALTLFDVEPARADSLAAELQARFPAASV CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCCC TAGGALDAAMASATGLIHATPTGMLKHPGLPLPAHLLATRPWVADIVYFPLETELVRVAR CCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHCCCHHHHHEECCCHHHHHHHHH AAGCRTLPGGGMAVFQAVDAFEIFTGREPDAERMLAHFETLVAQ HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SGTSFLIGLIGQGIGGSLSPAMHEREGGLQGFNYVYRRLDLDALGLTVDALPELLDAAE CCHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCHHHHHCCHHHHHHHHHHHH RMGYDGLNITHPCKQRVIAHLDTLSDDARALGAVNTVRFAGGKRSGHNTDWSGFAKSFRR HCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHH GLAGAPMERVVQLGAGGAGAAVAHAVLMLGAQALTLFDVEPARADSLAAELQARFPAASV CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCCC TAGGALDAAMASATGLIHATPTGMLKHPGLPLPAHLLATRPWVADIVYFPLETELVRVAR CCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHCCCHHHHHEECCCHHHHHHHHH AAGCRTLPGGGMAVFQAVDAFEIFTGREPDAERMLAHFETLVAQ HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12692562; 11572948 [H]