The gene/protein map for NC_012721 is currently unavailable.
Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

Click here to switch to the map view.

The map label for this gene is rbtD [H]

Identifier: 238023823

GI number: 238023823

Start: 428345

End: 429073

Strand: Reverse

Name: rbtD [H]

Synonym: bglu_2g03610

Alternate gene names: 238023823

Gene position: 429073-428345 (Counterclockwise)

Preceding gene: 238023824

Following gene: 238023822

Centisome position: 15.18

GC content: 70.64

Gene sequence:

>729_bases
ATGTCCGAATCCCTGAACGGAAAGATCGCCGCGATCACCGGCGCCGCCTCCGGCATCGGCCTCGCCTGCGCGCGCGCGCT
GATCGGCGCCGGCGCGAAGGTGGTGCTGATCGACCGCGCCCAAGAGCGGCTCGCCGCCTGCCGCGACGAACTCGGGCCGA
ACGCGCTGCCGCTCGCGGTGGACCTGCTGCAGCCGCAGCAGGTCTGCGCCATGCTGCCGCGCATCCTGGAACTCGCCGGC
GGCCTCGACATCTTCCACGCCAACGCCGGCGCCTACGTGGGCGGCGAGGTCGCGAACGGCAATCCCGACGACTGGGACCG
CATGCTGAACCTCAACGTCAACGCCGCGTTCCGCTCGGTGCATGCGGTGCTGCCGCACCTGATCGCGCAGCGAGCCGGCG
ATATCATCTTCACCAGCTCGATCGCGGGCATCGTGCCGGTGGTCTGGGAGCCGATCTACACGGCCTCGAAGTTCGCGGTG
CAGGCCTTCGTCCACACCACGCGGCGCCAGGTGATGAAGCACGGCGTGCGGGTGGGCGCGGTGGCGCCGGGGCCGGTCGT
CACGGCGCTGCTCGACGACTGGCCGCGTGCCAAGATGGAGGAGGCGCTCGCGGCCGGCAGCCTGATGCAGCCGGAGGAGG
TGGCCGACGCGGTGCTGTTCATGCTGAGCCGGCCGCGCAACGTGACGATCCGCGATCTCGTGATCCTGCCCACCCAGGTC
GATCTCTGA

Upstream 100 bases:

>100_bases
GCGATCGCGGTGATCGTCGATTCGCTGGCGCGGCGCTCGCGCGTCTCGCACGGCCGTGCCTGAGGCGCGCGCCGCTACCC
GTCACCCTGGAGAAACCCGC

Downstream 100 bases:

>100_bases
CCGGCCGGAACGCCCCGCCCTCACGCAGACAGGAACCCGACATGACGGACCACTCCCCCGCCGCGCCGCATGGCGCCGGC
CGCTACCTGATCGGCATCGA

Product: putative ribitol 2-dehydrogenase

Products: NA

Alternate protein names: RDH [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSESLNGKIAAITGAASGIGLACARALIGAGAKVVLIDRAQERLAACRDELGPNALPLAVDLLQPQQVCAMLPRILELAG
GLDIFHANAGAYVGGEVANGNPDDWDRMLNLNVNAAFRSVHAVLPHLIAQRAGDIIFTSSIAGIVPVVWEPIYTASKFAV
QAFVHTTRRQVMKHGVRVGAVAPGPVVTALLDDWPRAKMEEALAAGSLMQPEEVADAVLFMLSRPRNVTIRDLVILPTQV
DL

Sequences:

>Translated_242_residues
MSESLNGKIAAITGAASGIGLACARALIGAGAKVVLIDRAQERLAACRDELGPNALPLAVDLLQPQQVCAMLPRILELAG
GLDIFHANAGAYVGGEVANGNPDDWDRMLNLNVNAAFRSVHAVLPHLIAQRAGDIIFTSSIAGIVPVVWEPIYTASKFAV
QAFVHTTRRQVMKHGVRVGAVAPGPVVTALLDDWPRAKMEEALAAGSLMQPEEVADAVLFMLSRPRNVTIRDLVILPTQV
DL
>Mature_241_residues
SESLNGKIAAITGAASGIGLACARALIGAGAKVVLIDRAQERLAACRDELGPNALPLAVDLLQPQQVCAMLPRILELAGG
LDIFHANAGAYVGGEVANGNPDDWDRMLNLNVNAAFRSVHAVLPHLIAQRAGDIIFTSSIAGIVPVVWEPIYTASKFAVQ
AFVHTTRRQVMKHGVRVGAVAPGPVVTALLDDWPRAKMEEALAAGSLMQPEEVADAVLFMLSRPRNVTIRDLVILPTQVD
L

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=32.843137254902, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=30.5555555555556, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI20149619, Length=246, Percent_Identity=30.0813008130081, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=32.9411764705882, Blast_Score=87, Evalue=9e-18,
Organism=Homo sapiens, GI40254992, Length=218, Percent_Identity=26.1467889908257, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI32483357, Length=241, Percent_Identity=26.9709543568465, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=30.3643724696356, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI66933014, Length=229, Percent_Identity=30.5676855895196, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031737, Length=230, Percent_Identity=28.2608695652174, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923817, Length=239, Percent_Identity=25.1046025104602, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=28.1914893617021, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=27.4111675126904, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4503817, Length=227, Percent_Identity=25.9911894273128, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=30.4166666666667, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI59889578, Length=221, Percent_Identity=27.6018099547511, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=186, Percent_Identity=31.7204301075269, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=246, Percent_Identity=26.0162601626016, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI7705925, Length=235, Percent_Identity=28.5106382978723, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787335, Length=223, Percent_Identity=31.390134529148, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787820, Length=237, Percent_Identity=31.2236286919831, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87082100, Length=235, Percent_Identity=30.6382978723404, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1789208, Length=231, Percent_Identity=30.3030303030303, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=28.1632653061224, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082160, Length=193, Percent_Identity=29.5336787564767, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786701, Length=244, Percent_Identity=27.0491803278689, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790717, Length=229, Percent_Identity=25.764192139738, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787526, Length=195, Percent_Identity=32.8205128205128, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787905, Length=227, Percent_Identity=29.9559471365639, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367365, Length=227, Percent_Identity=30.8370044052863, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789378, Length=236, Percent_Identity=28.3898305084746, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788459, Length=237, Percent_Identity=24.8945147679325, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=249, Percent_Identity=30.9236947791165, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=248, Percent_Identity=28.2258064516129, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=244, Percent_Identity=29.5081967213115, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=241, Percent_Identity=30.2904564315353, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=246, Percent_Identity=28.8617886178862, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=231, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=249, Percent_Identity=29.718875502008, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=246, Percent_Identity=30.4878048780488, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=248, Percent_Identity=27.4193548387097, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=31.5573770491803, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=241, Percent_Identity=26.9709543568465, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=251, Percent_Identity=27.8884462151394, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=245, Percent_Identity=27.3469387755102, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=243, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=241, Percent_Identity=26.5560165975104, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=254, Percent_Identity=26.7716535433071, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=28.9795918367347, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=247, Percent_Identity=27.5303643724696, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=249, Percent_Identity=26.1044176706827, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=230, Percent_Identity=27.3913043478261, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=241, Percent_Identity=26.5560165975104, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=233, Percent_Identity=26.6094420600858, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=248, Percent_Identity=27.0161290322581, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=197, Percent_Identity=25.8883248730964, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=26.1538461538462, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=249, Percent_Identity=32.1285140562249, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=200, Percent_Identity=28, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28571387, Length=244, Percent_Identity=30.327868852459, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281364494, Length=252, Percent_Identity=29.3650793650794, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24663911, Length=251, Percent_Identity=30.2788844621514, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21357041, Length=233, Percent_Identity=30.4721030042918, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21358495, Length=245, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI23397609, Length=236, Percent_Identity=31.3559322033898, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28571526, Length=239, Percent_Identity=29.2887029288703, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007236, Length=252, Percent_Identity=28.968253968254, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21355319, Length=231, Percent_Identity=30.3030303030303, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24639444, Length=226, Percent_Identity=30.5309734513274, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641388, Length=254, Percent_Identity=29.5275590551181, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648944, Length=238, Percent_Identity=28.1512605042017, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24644339, Length=230, Percent_Identity=29.5652173913043, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24641232, Length=251, Percent_Identity=25.8964143426295, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364892, Length=227, Percent_Identity=27.7533039647577, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007234, Length=257, Percent_Identity=27.2373540856031, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=28.5106382978723, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649181, Length=173, Percent_Identity=24.8554913294798, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=24.8554913294798, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=228, Percent_Identity=28.0701754385965, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331218, Length=199, Percent_Identity=25.6281407035176, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24665243, Length=199, Percent_Identity=25.6281407035176, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI221331216, Length=200, Percent_Identity=26, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665247, Length=200, Percent_Identity=26, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007238, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.56 [H]

Molecular weight: Translated: 25619; Mature: 25488

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSESLNGKIAAITGAASGIGLACARALIGAGAKVVLIDRAQERLAACRDELGPNALPLAV
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHHH
DLLQPQQVCAMLPRILELAGGLDIFHANAGAYVGGEVANGNPDDWDRMLNLNVNAAFRSV
HHCCHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCCCCHHHEEECCHHHHHHHH
HAVLPHLIAQRAGDIIFTSSIAGIVPVVWEPIYTASKFAVQAFVHTTRRQVMKHGVRVGA
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
VAPGPVVTALLDDWPRAKMEEALAAGSLMQPEEVADAVLFMLSRPRNVTIRDLVILPTQV
CCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
DL
CC
>Mature Secondary Structure 
SESLNGKIAAITGAASGIGLACARALIGAGAKVVLIDRAQERLAACRDELGPNALPLAV
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHHH
DLLQPQQVCAMLPRILELAGGLDIFHANAGAYVGGEVANGNPDDWDRMLNLNVNAAFRSV
HHCCHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCCCCHHHEEECCHHHHHHHH
HAVLPHLIAQRAGDIIFTSSIAGIVPVVWEPIYTASKFAVQAFVHTTRRQVMKHGVRVGA
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
VAPGPVVTALLDDWPRAKMEEALAAGSLMQPEEVADAVLFMLSRPRNVTIRDLVILPTQV
CCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
DL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3904726; 2933028; 3891331 [H]