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The map label for this gene is xylH [H]

Identifier: 238023824

GI number: 238023824

Start: 429111

End: 430370

Strand: Reverse

Name: xylH [H]

Synonym: bglu_2g03620

Alternate gene names: 238023824

Gene position: 430370-429111 (Counterclockwise)

Preceding gene: 238023825

Following gene: 238023823

Centisome position: 15.22

GC content: 73.73

Gene sequence:

>1260_bases
ATGCGCAACGACACCTCCCCCACGCCGCCGTCCCGGCCGCTGCTCGATCGCGCCGACGCGCGCGTGAAGCACGCCGGCAG
CCTCGGCGAGAGCCTCGCCGCGTTCGCCGCCCGCGTGCGCGCGGGCGATCTCGGCTCGCTGCCGGTGGCGGCCGGCCTCG
TCATCATCTGGACCGTGTTCACCGGCCTGAACCCGGTGTTCGTGTCGGCCGACAACCTCGTGAACCTGCTGTTCGACTGC
TCGACGGTGGGCGTGATCTCGCTCGGCATCGTCTGCGTGCTGATGGTCGGGCAGATCGATCTGTCGGTCGGCTCGATCAG
CGGCTTCGCCTCGGCGCTGGTGGGCACGCTGTGGGTCGACCAGGGCTGGCCGGTGGCGCTCGCGATCCTCGCCGCGATCG
CGGCGGGCGCGGTGTTCGGCGCGCTCTACGCGCTGCTGTTCAACCGGCTCGGCATGCCGAGCTTCGTCACCACGCTGGCC
GGCCTGCTCGCGATCCTGGGCCTGCAGCTGTACGTGCTCGGGCCGAGCGGCTCGATCAACCTGCCCTACGGCTCGACGAT
GGTCGATCTCGGCCAGTCGCTGACCCTGCCTGCGCCGGTCTCGCACCTGCTCGCGCTGCTGCCCGGCGCGGCGCTGCTGC
TGCTCGGCCTGCGCACGCAGGCGCGGCGCCGCGCGGCGCAGCTGTCCGCGCCGTCGGCCGGCGCGCTGCTCGCGCGCGCC
GCGGCGGTCACCGTGCCGCTCGAACTGGCGGTCGCCTATCTCGACCGCGGGCGCGGCGTGCCGCTGATGTTCGGCCTGTT
CGTGGTGCTGGCCGCGGCGATGCACTACGCGCTCACGCGCACCCGCTGGGGCCGCTCGATGCACGCGGTGGGCGGCAACC
ACGAGGCCGCGCGCCGCGCCGGCATCCGGGTGGGCGCGATCTACGCCAGCGCGTTCATGCTGTGCGCGAGCCTGGCCGCG
CTCGGCGGGATCCTGAGCGCCGCGCGGCTCGCCTCGGCCAGCCAGCAGGCCGGCACCGGCGACGTCAACCTCAACGCGAT
CGCGGCGGCCGTGATCGGCGGCACCAGCCTGTTCGGCGGACGCGGCAGCGCGTGGTCGGCGGTGCTCGGCATCGTCGTGA
TCCAGTCGATCGCGAGCGGCCTCACGCTGCTGAACCTGTCCTCGTCGCTGCGCTTCATGATCACCGGCGCGGTGCTCGCG
ATCGCGGTGATCGTCGATTCGCTGGCGCGGCGCTCGCGCGTCTCGCACGGCCGTGCCTGA

Upstream 100 bases:

>100_bases
CTGGTCGCGGCCATCACCGGCGCGACCGAGAACGCGGTGTCGCGCCGCGCCGGCCGGCGCGAAGCCAGCCAGGGCGCCTA
AGCCTCGCAAGGAATCGATC

Downstream 100 bases:

>100_bases
GGCGCGCGCCGCTACCCGTCACCCTGGAGAAACCCGCATGTCCGAATCCCTGAACGGAAAGATCGCCGCGATCACCGGCG
CCGCCTCCGGCATCGGCCTC

Product: putative permease of ABC transporter

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MRNDTSPTPPSRPLLDRADARVKHAGSLGESLAAFAARVRAGDLGSLPVAAGLVIIWTVFTGLNPVFVSADNLVNLLFDC
STVGVISLGIVCVLMVGQIDLSVGSISGFASALVGTLWVDQGWPVALAILAAIAAGAVFGALYALLFNRLGMPSFVTTLA
GLLAILGLQLYVLGPSGSINLPYGSTMVDLGQSLTLPAPVSHLLALLPGAALLLLGLRTQARRRAAQLSAPSAGALLARA
AAVTVPLELAVAYLDRGRGVPLMFGLFVVLAAAMHYALTRTRWGRSMHAVGGNHEAARRAGIRVGAIYASAFMLCASLAA
LGGILSAARLASASQQAGTGDVNLNAIAAAVIGGTSLFGGRGSAWSAVLGIVVIQSIASGLTLLNLSSSLRFMITGAVLA
IAVIVDSLARRSRVSHGRA

Sequences:

>Translated_419_residues
MRNDTSPTPPSRPLLDRADARVKHAGSLGESLAAFAARVRAGDLGSLPVAAGLVIIWTVFTGLNPVFVSADNLVNLLFDC
STVGVISLGIVCVLMVGQIDLSVGSISGFASALVGTLWVDQGWPVALAILAAIAAGAVFGALYALLFNRLGMPSFVTTLA
GLLAILGLQLYVLGPSGSINLPYGSTMVDLGQSLTLPAPVSHLLALLPGAALLLLGLRTQARRRAAQLSAPSAGALLARA
AAVTVPLELAVAYLDRGRGVPLMFGLFVVLAAAMHYALTRTRWGRSMHAVGGNHEAARRAGIRVGAIYASAFMLCASLAA
LGGILSAARLASASQQAGTGDVNLNAIAAAVIGGTSLFGGRGSAWSAVLGIVVIQSIASGLTLLNLSSSLRFMITGAVLA
IAVIVDSLARRSRVSHGRA
>Mature_419_residues
MRNDTSPTPPSRPLLDRADARVKHAGSLGESLAAFAARVRAGDLGSLPVAAGLVIIWTVFTGLNPVFVSADNLVNLLFDC
STVGVISLGIVCVLMVGQIDLSVGSISGFASALVGTLWVDQGWPVALAILAAIAAGAVFGALYALLFNRLGMPSFVTTLA
GLLAILGLQLYVLGPSGSINLPYGSTMVDLGQSLTLPAPVSHLLALLPGAALLLLGLRTQARRRAAQLSAPSAGALLARA
AAVTVPLELAVAYLDRGRGVPLMFGLFVVLAAAMHYALTRTRWGRSMHAVGGNHEAARRAGIRVGAIYASAFMLCASLAA
LGGILSAARLASASQQAGTGDVNLNAIAAAVIGGTSLFGGRGSAWSAVLGIVVIQSIASGLTLLNLSSSLRFMITGAVLA
IAVIVDSLARRSRVSHGRA

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=363, Percent_Identity=33.6088154269972, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790191, Length=154, Percent_Identity=40.9090909090909, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788896, Length=155, Percent_Identity=41.2903225806452, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790524, Length=152, Percent_Identity=36.8421052631579, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI145693152, Length=136, Percent_Identity=35.2941176470588, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787793, Length=348, Percent_Identity=29.0229885057471, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87082395, Length=126, Percent_Identity=34.9206349206349, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 42654; Mature: 42654

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNDTSPTPPSRPLLDRADARVKHAGSLGESLAAFAARVRAGDLGSLPVAAGLVIIWTVF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TGLNPVFVSADNLVNLLFDCSTVGVISLGIVCVLMVGQIDLSVGSISGFASALVGTLWVD
HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
QGWPVALAILAAIAAGAVFGALYALLFNRLGMPSFVTTLAGLLAILGLQLYVLGPSGSIN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCCEE
LPYGSTMVDLGQSLTLPAPVSHLLALLPGAALLLLGLRTQARRRAAQLSAPSAGALLARA
CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AAVTVPLELAVAYLDRGRGVPLMFGLFVVLAAAMHYALTRTRWGRSMHAVGGNHEAARRA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHH
GIRVGAIYASAFMLCASLAALGGILSAARLASASQQAGTGDVNLNAIAAAVIGGTSLFGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC
RGSAWSAVLGIVVIQSIASGLTLLNLSSSLRFMITGAVLAIAVIVDSLARRSRVSHGRA
CCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRNDTSPTPPSRPLLDRADARVKHAGSLGESLAAFAARVRAGDLGSLPVAAGLVIIWTVF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TGLNPVFVSADNLVNLLFDCSTVGVISLGIVCVLMVGQIDLSVGSISGFASALVGTLWVD
HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
QGWPVALAILAAIAAGAVFGALYALLFNRLGMPSFVTTLAGLLAILGLQLYVLGPSGSIN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCCEE
LPYGSTMVDLGQSLTLPAPVSHLLALLPGAALLLLGLRTQARRRAAQLSAPSAGALLARA
CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AAVTVPLELAVAYLDRGRGVPLMFGLFVVLAAAMHYALTRTRWGRSMHAVGGNHEAARRA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHH
GIRVGAIYASAFMLCASLAALGGILSAARLASASQQAGTGDVNLNAIAAAVIGGTSLFGG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC
RGSAWSAVLGIVVIQSIASGLTLLNLSSSLRFMITGAVLAIAVIVDSLARRSRVSHGRA
CCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]