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The map label for this gene is ycaN [H]

Identifier: 238023789

GI number: 238023789

Start: 385320

End: 386267

Strand: Reverse

Name: ycaN [H]

Synonym: bglu_2g03240

Alternate gene names: 238023789

Gene position: 386267-385320 (Counterclockwise)

Preceding gene: 238023792

Following gene: 238023783

Centisome position: 13.66

GC content: 74.47

Gene sequence:

>948_bases
ATGAACGTCGATCTGTCGGACCTGGGCGCGTTCGTGGCGGTGGCGCGCGCCAAGGGCTTTCGCGACGGCGCGCGCGCCAC
CGGCACCAGCGCGTCGGGGCTCAGCGAGGCGGTGCGAAGGCTGGAGGCTCGGCTCGGCGTGCGGCTGCTGAACCGCACCA
CCCGCAGCGTGGTGCCGACCGAGGCGGGCGAACGGCTGCTGGAGCGGCTCGCCCCGGCGTTCGGCGAGGTGGAGGCGGCA
CTCGACGAGGTCCACGGCTTTCGCGACCGGCCGGCCGGCACGCTGCGCCTGAACGTGCCGGTCAGCGTGGCGCGGCTGGT
GCTGCCGTCGATCGTGCCGCGCTTCCTGGCGGCCTACCCCGAGATCCGGATGGAAGTGTCGGCCGACGAGAATTTCGTCG
ACGTGCTGGCGGCGGGCTGCGACGCCGGCATCCGCTACGAGGAGCGGCTCGAACAGGACATGATCGCGGTGCCGATCGGC
CCGCGCCAGCAGCGCTTCGCGATGGCGGCCTCGCCCGCCTACCTGGACCGGCGCGGGCGGCCCGCGCACCCGCGCGAGCT
GCTCGACCACGCCTGCCTTCTCGGCCGCTTTCCGAGCGGCGCGATGCCGCCGTGGAGCTTCGAGCGCGACGGCGAGACGG
TGCGCATCGAGCCGGCGGGGCAACTGCTCGTACAACTGGGCGCGGCGGTCGATCTGGCCGTCGATGCGGCGGTGGCAGGC
ACCGGCATCATCCGGCTGTTCGAGGACTGGCTGCGCCCACACCTCGCGAGCGGCGCGCTCGAACCGGTGCTCGAAGGCTG
GTGGGAGACCTTCTCGGGGCCGTTCCTCTACTACCCGGGGCGGCGGCTCGTGCCGGCGCCGCTGCGCGCGTTCATCGATT
TCGTGCGCGCCGACGGCGAGGCACGGGCCGCAGCGGCCCCGCGGCGGCCGTCCGGCGCCGCGCCCTGA

Upstream 100 bases:

>100_bases
GTTCATGAAGTGCCTCCTGGTAGGGAAGCCCGAGCTTACGCGCTGGCGATTCCACCGATAAGCCGCCATAATCCGCACGG
CTTGTACGAAGGAGCGAACA

Downstream 100 bases:

>100_bases
TTCCGCGGCCGGCGCCGGCGAGCACGCGCGGCGCCGCCGGCCGCCGCGCTCATGCGCGAGCGCGGCGCGGGCATCCGCCC
GGCGCGGCCTCGGGCCGGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNVDLSDLGAFVAVARAKGFRDGARATGTSASGLSEAVRRLEARLGVRLLNRTTRSVVPTEAGERLLERLAPAFGEVEAA
LDEVHGFRDRPAGTLRLNVPVSVARLVLPSIVPRFLAAYPEIRMEVSADENFVDVLAAGCDAGIRYEERLEQDMIAVPIG
PRQQRFAMAASPAYLDRRGRPAHPRELLDHACLLGRFPSGAMPPWSFERDGETVRIEPAGQLLVQLGAAVDLAVDAAVAG
TGIIRLFEDWLRPHLASGALEPVLEGWWETFSGPFLYYPGRRLVPAPLRAFIDFVRADGEARAAAAPRRPSGAAP

Sequences:

>Translated_315_residues
MNVDLSDLGAFVAVARAKGFRDGARATGTSASGLSEAVRRLEARLGVRLLNRTTRSVVPTEAGERLLERLAPAFGEVEAA
LDEVHGFRDRPAGTLRLNVPVSVARLVLPSIVPRFLAAYPEIRMEVSADENFVDVLAAGCDAGIRYEERLEQDMIAVPIG
PRQQRFAMAASPAYLDRRGRPAHPRELLDHACLLGRFPSGAMPPWSFERDGETVRIEPAGQLLVQLGAAVDLAVDAAVAG
TGIIRLFEDWLRPHLASGALEPVLEGWWETFSGPFLYYPGRRLVPAPLRAFIDFVRADGEARAAAAPRRPSGAAP
>Mature_315_residues
MNVDLSDLGAFVAVARAKGFRDGARATGTSASGLSEAVRRLEARLGVRLLNRTTRSVVPTEAGERLLERLAPAFGEVEAA
LDEVHGFRDRPAGTLRLNVPVSVARLVLPSIVPRFLAAYPEIRMEVSADENFVDVLAAGCDAGIRYEERLEQDMIAVPIG
PRQQRFAMAASPAYLDRRGRPAHPRELLDHACLLGRFPSGAMPPWSFERDGETVRIEPAGQLLVQLGAAVDLAVDAAVAG
TGIIRLFEDWLRPHLASGALEPVLEGWWETFSGPFLYYPGRRLVPAPLRAFIDFVRADGEARAAAAPRRPSGAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=41.4141414141414, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=37.3737373737374, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1786401, Length=305, Percent_Identity=30.8196721311475, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=28.3276450511945, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=30.1369863013699, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789440, Length=304, Percent_Identity=24.0131578947368, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=25.6849315068493, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=34.1463414634146, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=26.4, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=26.643598615917, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=141, Percent_Identity=30.4964539007092, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=29.0322580645161, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34117; Mature: 34117

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVDLSDLGAFVAVARAKGFRDGARATGTSASGLSEAVRRLEARLGVRLLNRTTRSVVPT
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EAGERLLERLAPAFGEVEAALDEVHGFRDRPAGTLRLNVPVSVARLVLPSIVPRFLAAYP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
EIRMEVSADENFVDVLAAGCDAGIRYEERLEQDMIAVPIGPRQQRFAMAASPAYLDRRGR
HHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHCEEECCCCCCHHHHHHHCCCHHHHCCCC
PAHPRELLDHACLLGRFPSGAMPPWSFERDGETVRIEPAGQLLVQLGAAVDLAVDAAVAG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
TGIIRLFEDWLRPHLASGALEPVLEGWWETFSGPFLYYPGRRLVPAPLRAFIDFVRADGE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCC
ARAAAAPRRPSGAAP
HHHCCCCCCCCCCCC
>Mature Secondary Structure
MNVDLSDLGAFVAVARAKGFRDGARATGTSASGLSEAVRRLEARLGVRLLNRTTRSVVPT
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EAGERLLERLAPAFGEVEAALDEVHGFRDRPAGTLRLNVPVSVARLVLPSIVPRFLAAYP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
EIRMEVSADENFVDVLAAGCDAGIRYEERLEQDMIAVPIGPRQQRFAMAASPAYLDRRGR
HHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHCEEECCCCCCHHHHHHHCCCHHHHCCCC
PAHPRELLDHACLLGRFPSGAMPPWSFERDGETVRIEPAGQLLVQLGAAVDLAVDAAVAG
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
TGIIRLFEDWLRPHLASGALEPVLEGWWETFSGPFLYYPGRRLVPAPLRAFIDFVRADGE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCC
ARAAAAPRRPSGAAP
HHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]