| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238023761
Identifier: 238023761
GI number: 238023761
Start: 340466
End: 340909
Strand: Reverse
Name: 238023761
Synonym: bglu_2g02930
Alternate gene names: NA
Gene position: 340909-340466 (Counterclockwise)
Preceding gene: 238023762
Following gene: 238023760
Centisome position: 12.06
GC content: 72.97
Gene sequence:
>444_bases ATGACGACCTCCACCGAATCCGATCGCGCGCTCGAAGCCGAGGTCGCGGACCTGACGCTCGCGATCGGCCAGCTCGTGCG CCGGGTTCGCGCCGAAGTCGATCCGGGCGACTACAACCTGTCCCAGCTGAGCGTGCTGGCGCGCCTCGAGCATCGCAGCC CGATGACGATCGCCGAGCTGGCACGCGCCGAATCGATGAAGCCGCAGTCGATGGGCACGCTCGTGCATAGCCTCGAACAG GCCGGCCTGGTGGAGCGCCAGCCGCACCCCACCGACGGCCGCCAGTGGCTGATCGCGCTGACCGAGGCCGGCGCGGCCGA GCGCCGGCAGCGCCGCAGCGCGAAGCGCGCGTGGCTGCTCGAGGCGATCCGCGAGCTCGGCGTGGAGGAGCGCCGCACGC TGAGCGCGGTCACGCCGCTGCTGCGCCGGCTCGCCGAGCGCTGA
Upstream 100 bases:
>100_bases AGGCGCCGGCGCGGGCAGCCCCGTCTGTCCGGCCGCTTACCCACGCCGATCTCAGAAGTTTGTCTTGCAAGTTCAACTTC TCTTATCTACGATAGCACCC
Downstream 100 bases:
>100_bases GCCGCGGCGCAGCCCGCATCGCTTCGCATCGATTCGCCGCGCGGCATCCCCTCTCGCGCGCCGCGGCTGCGCGCCCCATG CGGGCAGCGCGGCCCCGGCT
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MTTSTESDRALEAEVADLTLAIGQLVRRVRAEVDPGDYNLSQLSVLARLEHRSPMTIAELARAESMKPQSMGTLVHSLEQ AGLVERQPHPTDGRQWLIALTEAGAAERRQRRSAKRAWLLEAIRELGVEERRTLSAVTPLLRRLAER
Sequences:
>Translated_147_residues MTTSTESDRALEAEVADLTLAIGQLVRRVRAEVDPGDYNLSQLSVLARLEHRSPMTIAELARAESMKPQSMGTLVHSLEQ AGLVERQPHPTDGRQWLIALTEAGAAERRQRRSAKRAWLLEAIRELGVEERRTLSAVTPLLRRLAER >Mature_146_residues TTSTESDRALEAEVADLTLAIGQLVRRVRAEVDPGDYNLSQLSVLARLEHRSPMTIAELARAESMKPQSMGTLVHSLEQA GLVERQPHPTDGRQWLIALTEAGAAERRQRRSAKRAWLLEAIRELGVEERRTLSAVTPLLRRLAER
Specific function: Unknown
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH marR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000835 - InterPro: IPR023187 - InterPro: IPR011991 [H]
Pfam domain/function: PF01047 MarR [H]
EC number: NA
Molecular weight: Translated: 16458; Mature: 16327
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSTESDRALEAEVADLTLAIGQLVRRVRAEVDPGDYNLSQLSVLARLEHRSPMTIAEL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH ARAESMKPQSMGTLVHSLEQAGLVERQPHPTDGRQWLIALTEAGAAERRQRRSAKRAWLL HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHH EAIRELGVEERRTLSAVTPLLRRLAER HHHHHHCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTSTESDRALEAEVADLTLAIGQLVRRVRAEVDPGDYNLSQLSVLARLEHRSPMTIAEL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH ARAESMKPQSMGTLVHSLEQAGLVERQPHPTDGRQWLIALTEAGAAERRQRRSAKRAWLL HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHH EAIRELGVEERRTLSAVTPLLRRLAER HHHHHHCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]