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The map label for this gene is fimZ [H]

Identifier: 238023661

GI number: 238023661

Start: 206066

End: 206713

Strand: Reverse

Name: fimZ [H]

Synonym: bglu_2g01800

Alternate gene names: 238023661

Gene position: 206713-206066 (Counterclockwise)

Preceding gene: 238023664

Following gene: 238023651

Centisome position: 7.31

GC content: 56.79

Gene sequence:

>648_bases
GTGAACAAAATTACCGTAGGCGTCGCGGACGACCACCCAGTCGTTCTACAAGGCGTTCAGCACATGCTATTGTCGAGCCC
TGATATCGATTTGCATTTTCAAATCGATGCCATCAAACCACTGCTTGTGCAGCTAGTTGAGTCTCCGGTTGACGTGCTTC
TCTGTGACTACGAATTCGAAGGAGACCCCGAGGCCGACGGCCTTCATCTGCTTGGCCGAATTAGGCGCATCGCGCCCCAC
ACTCGAGTGTTGTTTCTCAGCTGCCATTGCGCCGCCTACACCGTCTCAGCCGCGCTGAGCGCGGGCGCCTCCGGGTTCAT
CGGCAAGAGACGCGAGGATTTCGCTAACCTCATCACCGCCATTCACGCGGTGAAAAGTCGCGGCTTCTACCTAGCCGACT
CGATTGCCAGCCGACTGCTGGCAACGACGGGGCACGCCACCAACGACATTTGCTTGAGTCTCAACAAGCTTTCGGCGAAG
GAGGCGGCCGTGGTGCGGCTAATCTGCAATGGGCTGTCGATCAACGACATCGCCAAACGCCTGAAACGTAGTCCGAAAAC
CATCAGCAATCAGAAGAACGCGGGCATGAAGAAGCTCGGCGTGAAGAACGATATCGAACTTGCCTCGGTGATGCGCGAGT
GGCGTTGA

Upstream 100 bases:

>100_bases
TCCTTATTTACATCGCAGCAGGAAGAGAACCCAGCCAACGATACAGGCATATTTTTTGACGGATGTTGTGCCCGATCGTG
CTTGATCATGGAGCGCAGTC

Downstream 100 bases:

>100_bases
TTGAATGTACCCCTGTCTCCTTCGTCAAGCGCTAGGGCGCTGACTTGGGTTGGTACTCTCATGCCCCATGGCTTGGGACG
GCCTCGCTCGTTCGCACAGT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNKITVGVADDHPVVLQGVQHMLLSSPDIDLHFQIDAIKPLLVQLVESPVDVLLCDYEFEGDPEADGLHLLGRIRRIAPH
TRVLFLSCHCAAYTVSAALSAGASGFIGKRREDFANLITAIHAVKSRGFYLADSIASRLLATTGHATNDICLSLNKLSAK
EAAVVRLICNGLSINDIAKRLKRSPKTISNQKNAGMKKLGVKNDIELASVMREWR

Sequences:

>Translated_215_residues
MNKITVGVADDHPVVLQGVQHMLLSSPDIDLHFQIDAIKPLLVQLVESPVDVLLCDYEFEGDPEADGLHLLGRIRRIAPH
TRVLFLSCHCAAYTVSAALSAGASGFIGKRREDFANLITAIHAVKSRGFYLADSIASRLLATTGHATNDICLSLNKLSAK
EAAVVRLICNGLSINDIAKRLKRSPKTISNQKNAGMKKLGVKNDIELASVMREWR
>Mature_215_residues
MNKITVGVADDHPVVLQGVQHMLLSSPDIDLHFQIDAIKPLLVQLVESPVDVLLCDYEFEGDPEADGLHLLGRIRRIAPH
TRVLFLSCHCAAYTVSAALSAGASGFIGKRREDFANLITAIHAVKSRGFYLADSIASRLLATTGHATNDICLSLNKLSAK
EAAVVRLICNGLSINDIAKRLKRSPKTISNQKNAGMKKLGVKNDIELASVMREWR

Specific function: Rcsb Is A Member Of The Two-Component Regulatory System Rcsb/Rcsc, Which Regulates The Expression Of Genes Involved In Colanic Acid Capsule Synthesis. Rcsb Acts As The Effector. Additional Control Is Provided By The Dependence On The Alternate Sigma Facto

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788546, Length=207, Percent_Identity=31.8840579710145, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1790102, Length=208, Percent_Identity=33.1730769230769, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=28.0193236714976, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788712, Length=210, Percent_Identity=29.5238095238095, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788222, Length=204, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23434; Mature: 23434

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKITVGVADDHPVVLQGVQHMLLSSPDIDLHFQIDAIKPLLVQLVESPVDVLLCDYEFE
CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCHHEEEECCCCC
GDPEADGLHLLGRIRRIAPHTRVLFLSCHCAAYTVSAALSAGASGFIGKRREDFANLITA
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
IHAVKSRGFYLADSIASRLLATTGHATNDICLSLNKLSAKEAAVVRLICNGLSINDIAKR
HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEEHHHHCHHHHHHHHHHHCCCCHHHHHHH
LKRSPKTISNQKNAGMKKLGVKNDIELASVMREWR
HHCCCCHHCCCCCCCHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNKITVGVADDHPVVLQGVQHMLLSSPDIDLHFQIDAIKPLLVQLVESPVDVLLCDYEFE
CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCHHEEEECCCCC
GDPEADGLHLLGRIRRIAPHTRVLFLSCHCAAYTVSAALSAGASGFIGKRREDFANLITA
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
IHAVKSRGFYLADSIASRLLATTGHATNDICLSLNKLSAKEAAVVRLICNGLSINDIAKR
HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEEHHHHCHHHHHHHHHHHCCCCHHHHHHH
LKRSPKTISNQKNAGMKKLGVKNDIELASVMREWR
HHCCCCHHCCCCCCCHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]