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The map label for this gene is hcp1 [H]

Identifier: 238023635

GI number: 238023635

Start: 159409

End: 159891

Strand: Direct

Name: hcp1 [H]

Synonym: bglu_2g01440

Alternate gene names: 238023635

Gene position: 159409-159891 (Clockwise)

Preceding gene: 238023634

Following gene: 238023636

Centisome position: 5.64

GC content: 60.25

Gene sequence:

>483_bases
ATGGCACAAGACATCTTTCTCAAACTCAACGGGATCGATGGTGAGTCGGAGGACGCCAGCCACAAGAATGAAATCGACGT
TCTTAGCTGGTCGTGGAATGTCTCGCAGCAGTCGAACATGCACGTCGGTTCCGGAGGCGGTGCGGGTCGGGCGACCGTTG
ACGACCTCACCTTCGAGCACTTCATCGACCGTTCGACGCCGAACCTCACGCAGTACTGCCTGACGGGCAAGCACATCGAC
GAGGCCAGGCTCGTCGTGCGCAAGGCAGGCGGCAACCCGCTCGAATACCTCAAGCTGACCATGAACGACGTGCTGGTCAC
TTCGGTGCACCCGTCTGGCGTGAGCGAAAGCGAATCGCGACCGCGTGAAGTGGTGTCGCTTTCGTTCTCGCGCATGAAGC
AGGAGTACGTCGTGCAGAATGCGCAAGGCGGCAGCGGCGGGGCGATCACGGCCACCTTCGACATCAAGAAGAACAGCGCC
TGA

Upstream 100 bases:

>100_bases
GCGGGCTGCGGTTGCACCGCGAGCGAGCGGTGCCGGCGCTCGTTAAATATGCCTGGCGGTTTCGAACCTTCCATTCAATC
ACGCACCAAGGAGCATCTTC

Downstream 100 bases:

>100_bases
GTGTCCTAGGCAGGCTCGTGTCCGATACGTGTCGCGTGGCGAGGCCTGCGCGACACGACGTGATCGTGGGCCAGGACGCC
GATGCGGCAGGTCGACATCC

Product: type VI secretion system effector, Hcp1 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHID
EARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA

Sequences:

>Translated_160_residues
MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHID
EARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA
>Mature_159_residues
AQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHIDE
ARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17385; Mature: 17253

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEH
CCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHH
FIDRSTPNLTQYCLTGKHIDEARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESR
HHCCCCCCHHHHHHCCCCCCHHEEEEEECCCCHHHHEEEECCEEEEEEECCCCCCCCCCC
PREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA
CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure 
AQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEH
CCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHH
FIDRSTPNLTQYCLTGKHIDEARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESR
HHCCCCCCHHHHHHCCCCCCHHEEEEEECCCCHHHHEEEECCEEEEEEECCCCCCCCCCC
PREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA
CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]