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The map label for this gene is virS [H]

Identifier: 238023602

GI number: 238023602

Start: 109667

End: 110692

Strand: Direct

Name: virS [H]

Synonym: bglu_2g01050

Alternate gene names: 238023602

Gene position: 109667-110692 (Clockwise)

Preceding gene: 238023601

Following gene: 238023607

Centisome position: 3.88

GC content: 66.57

Gene sequence:

>1026_bases
ATGGGCGACGACGCGCGAGGAGGCGCAGATACCGTGTCGGCAAGCAATGGATATCCGACGATTCGCGGCGCAGTGATGGG
GCCTATCGTGCGTGCGCTGGACGCGGCGGGCGCCCCTTGCGACGCGCTGCTGGCCGAATTCGGGCTGAGCCGGCGGCAGC
TTTCCGATCCTTACGAAATCCTGCCGCTCGGCCGTTACATCGGCGCCTTCGAGCGCGCCGCGCAGGTGCTGGGCGAGTCG
TTCCTCGGGCTGCGGCTCGGGCGGGAGATCCCGGTTTCGGAACTCGGTCCCGCGGGTTTCCTGTTCGTGTCGTCTCCCAC
GCTAGGCGCCGCGATCGGCCGCTTCAGCGAGGCGTTGGCGTCCTGGCAGAGCGCGGCCATCGTCGATCTGGCCGGCAATC
ATGGCTGGCCGATGTGGCGATACCGGATCGCGCATCCGGGCATATGGCCGCGGCGTCAGGATGCGGAGTACAGCGTCAGC
TCGATGTGCCACATGATTCGCTTGGTGAGGGGCGCCCAGTGGAAGCCGGTCGAAGTCCATTTCGAACATGCGGCGCCCGA
CGAGATCAAGCCGCTGATGCGGGTGTTCCAGGCACCGGTGCGATTCCAGCAGCCGGTGAGCGGCGTGGTGATGTGCGCGC
AGGATCTCGACGCCCCGCTCAAGAGCGTCGACGTTTCGCTGGCGCGCCTGATGGAACGTCATGCCACGGATCTCATCGAG
CGCGACGCGATGCCGAAGAATCTGGTGGATCAGGTGCGGGACCTGGTGACACGTCGCTTGGCGCGGGAGAAGCTCGTCGT
GACCGATATCGCCCGCGATCTGGGCCTGTCCAACCGTTCGCTCCAGCGACATCTCGCGATGGCCAATACGTCGGTGCGCG
AGATCATTCGCGAGGAGCGGCAGCGCAGCGTGGCAACGCTGCATGAGCGGGAGGGGATGAACAATGCCGCTATCGCGAGA
GCCGTGGGCTACGCCGATGCCACGGTGCTGTGGCGCGCCAAGCGTAACTGGACGCGCCGGGGCTAA

Upstream 100 bases:

>100_bases
CGCGGACAGGCCCGTCGTACCGATGGCGCCATCCGTGTTTTTGACGACTTGCCTGTCGCGCCATTGCGTAGATAAAGTGA
GCCGCGGCAGGTGATACGTG

Downstream 100 bases:

>100_bases
CGGGCCCGGGTATCTCGCGCGCCACGGGAACGAGGACCTGCAGCGGCGGCGTCTACCCCCTTGCTTCGAGCCGCACACGC
ACCTTCACGAAGCGTTCCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MGDDARGGADTVSASNGYPTIRGAVMGPIVRALDAAGAPCDALLAEFGLSRRQLSDPYEILPLGRYIGAFERAAQVLGES
FLGLRLGREIPVSELGPAGFLFVSSPTLGAAIGRFSEALASWQSAAIVDLAGNHGWPMWRYRIAHPGIWPRRQDAEYSVS
SMCHMIRLVRGAQWKPVEVHFEHAAPDEIKPLMRVFQAPVRFQQPVSGVVMCAQDLDAPLKSVDVSLARLMERHATDLIE
RDAMPKNLVDQVRDLVTRRLAREKLVVTDIARDLGLSNRSLQRHLAMANTSVREIIREERQRSVATLHEREGMNNAAIAR
AVGYADATVLWRAKRNWTRRG

Sequences:

>Translated_341_residues
MGDDARGGADTVSASNGYPTIRGAVMGPIVRALDAAGAPCDALLAEFGLSRRQLSDPYEILPLGRYIGAFERAAQVLGES
FLGLRLGREIPVSELGPAGFLFVSSPTLGAAIGRFSEALASWQSAAIVDLAGNHGWPMWRYRIAHPGIWPRRQDAEYSVS
SMCHMIRLVRGAQWKPVEVHFEHAAPDEIKPLMRVFQAPVRFQQPVSGVVMCAQDLDAPLKSVDVSLARLMERHATDLIE
RDAMPKNLVDQVRDLVTRRLAREKLVVTDIARDLGLSNRSLQRHLAMANTSVREIIREERQRSVATLHEREGMNNAAIAR
AVGYADATVLWRAKRNWTRRG
>Mature_340_residues
GDDARGGADTVSASNGYPTIRGAVMGPIVRALDAAGAPCDALLAEFGLSRRQLSDPYEILPLGRYIGAFERAAQVLGESF
LGLRLGREIPVSELGPAGFLFVSSPTLGAAIGRFSEALASWQSAAIVDLAGNHGWPMWRYRIAHPGIWPRRQDAEYSVSS
MCHMIRLVRGAQWKPVEVHFEHAAPDEIKPLMRVFQAPVRFQQPVSGVVMCAQDLDAPLKSVDVSLARLMERHATDLIER
DAMPKNLVDQVRDLVTRRLAREKLVVTDIARDLGLSNRSLQRHLAMANTSVREIIREERQRSVATLHEREGMNNAAIARA
VGYADATVLWRAKRNWTRRG

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37690; Mature: 37559

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDDARGGADTVSASNGYPTIRGAVMGPIVRALDAAGAPCDALLAEFGLSRRQLSDPYEI
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCHHH
LPLGRYIGAFERAAQVLGESFLGLRLGREIPVSELGPAGFLFVSSPTLGAAIGRFSEALA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHH
SWQSAAIVDLAGNHGWPMWRYRIAHPGIWPRRQDAEYSVSSMCHMIRLVRGAQWKPVEVH
HHHHCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
FEHAAPDEIKPLMRVFQAPVRFQQPVSGVVMCAQDLDAPLKSVDVSLARLMERHATDLIE
ECCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
RDAMPKNLVDQVRDLVTRRLAREKLVVTDIARDLGLSNRSLQRHLAMANTSVREIIREER
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
QRSVATLHEREGMNNAAIARAVGYADATVLWRAKRNWTRRG
HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GDDARGGADTVSASNGYPTIRGAVMGPIVRALDAAGAPCDALLAEFGLSRRQLSDPYEI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCCCHHH
LPLGRYIGAFERAAQVLGESFLGLRLGREIPVSELGPAGFLFVSSPTLGAAIGRFSEALA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHH
SWQSAAIVDLAGNHGWPMWRYRIAHPGIWPRRQDAEYSVSSMCHMIRLVRGAQWKPVEVH
HHHHCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
FEHAAPDEIKPLMRVFQAPVRFQQPVSGVVMCAQDLDAPLKSVDVSLARLMERHATDLIE
ECCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
RDAMPKNLVDQVRDLVTRRLAREKLVVTDIARDLGLSNRSLQRHLAMANTSVREIIREER
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
QRSVATLHEREGMNNAAIARAVGYADATVLWRAKRNWTRRG
HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]