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The map label for this gene is rpoE [H]

Identifier: 237814474

GI number: 237814474

Start: 4090064

End: 4090579

Strand: Reverse

Name: rpoE [H]

Synonym: GBP346_A4272

Alternate gene names: 237814474

Gene position: 4090579-4090064 (Counterclockwise)

Preceding gene: 237814478

Following gene: 237814473

Centisome position: 99.8

GC content: 68.8

Gene sequence:

>516_bases
ATGCCCTCCGCCGATCTCGATGACCCATTGCGCGAGTTGCTGCCGCGACTGCGCCGCTTCGCGCTCTGGCTGACCCGCGA
CGTGCACAGCGCCGACGATCTCGTGCAGTCGACGCTCGAGCGCGCGCTGTCGCGCTGGTCGACGCGCCGCGACGCTTCGG
CGCTGCGCAGCTGGCTCTTCACGATCCTCTACCGGCAGTTCGTCGATGCGACGCGCCGCGCGAAGCGTTACGCGTGGCTG
CTCGGCCGGATCAAGGATGACGACGAGCCGCAATGGCCGTCCGCCGAGGATCACGCGCTCGCGCGCTCGATGCTCGACGC
GTTCGGCCGGCTGTCGACGGAACAGCGCAGCCTGCTGCTGCTCGTCGCCGTCGAAGGGTTCAGCTATCAGGAAGTCGCCG
AGCTGCTCGACATCCCGATCGGCACCGTGATGTCGCGGCTGTCGCGCGCGCGGCAGGCGCTGCGCGCGCTCGGCGACGGC
GAGATTTCCGCTCCTTCGCTGCGTTTGATGAAATGA

Upstream 100 bases:

>100_bases
GTTTATTCCATCGAAATTTTTTTGCGAACGCATGGAATAACCGTCGGCGGCGAGCGTCTCATGCATTGAATCCACGCCCA
CGACGGCCCCCGATCCGCCC

Downstream 100 bases:

>100_bases
ACATTCCGCCCGACGAACACGATCTTCACGCCTATGTCGACGGCCGGCTCGACGCCGATGCGCGCGCGGCCGTCGAACGC
TGGCTCGCGCTGCATCCGGC

Product: ECF sigma factor PrtI

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MPSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLFTILYRQFVDATRRAKRYAWL
LGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLLLVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDG
EISAPSLRLMK

Sequences:

>Translated_171_residues
MPSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLFTILYRQFVDATRRAKRYAWL
LGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLLLVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDG
EISAPSLRLMK
>Mature_170_residues
PSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLFTILYRQFVDATRRAKRYAWLL
GRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLLLVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDGE
ISAPSLRLMK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19623; Mature: 19492

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TILYRQFVDATRRAKRYAWLLGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEEE
LVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDGEISAPSLRLMK
EEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
>Mature Secondary Structure 
PSADLDDPLRELLPRLRRFALWLTRDVHSADDLVQSTLERALSRWSTRRDASALRSWLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TILYRQFVDATRRAKRYAWLLGRIKDDDEPQWPSAEDHALARSMLDAFGRLSTEQRSLLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHEEE
LVAVEGFSYQEVAELLDIPIGTVMSRLSRARQALRALGDGEISAPSLRLMK
EEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]