| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237814363
Identifier: 237814363
GI number: 237814363
Start: 3990233
End: 3991639
Strand: Reverse
Name: 237814363
Synonym: GBP346_A4161
Alternate gene names: NA
Gene position: 3991639-3990233 (Counterclockwise)
Preceding gene: 237814364
Following gene: 237814362
Centisome position: 97.39
GC content: 69.44
Gene sequence:
>1407_bases GTGTACATATCGCTTTCGCTAAACGCGGTTTATCACGCCGCCTTCGATTGCTGCCCGCTTGCGCCGGCCGGCGCGCATCG CTGCGGGCTAACCCGGTTGTCGCGCGCGCAACGCGTCCGCTACACTCGCCGTTCGCCGACCCGTTGGTCGGGGAACGGCC GAGCGCGAGACACGGAGACGAACTCGATGATAGGAGCGTGGCGGTTCTGGGGAATCGGTACGGCGAACGCATGGGCGGCC GTTTCGGGCGTCGCGTTCGCGGAGGCCAGGACCGGCTTCGCCGCTTGCTCCGATGCTGCCTCCGCTCGCTTTGCCGCACC GCCGGGCCTCCGCGCGAAGGATGCGATCGCGTTGCCGCCGCGCGAAATCGACAGGTGGGCAACGCGCGCCGTTGAACTCG ACGATGCGGCCGATTCGGCCCGCGTGCCCAACGGCGCTTACTCACACCCGAGCGAAAATCACCTCGATGCGCCGATCGGC TCGGCCGTCTCCACACGTTCGTCCGCAATGGGCGGCACGGCCGCGCGCTTGCCCGCTCGGGCGATGTCCTCGATGGCGAC GGCTTCGGGTCTCGAATCGTTCGATGCAAAGCGCGCCTTTCGGGGCTTTGAAACACGACCACGCGATCTCTCTGCATCGG CTGCGATCGCCAGGCACGGCTTCGCGACGCGCGACAGGAAGACGATTGCCCCCGCCGGGCTCGACGCGGCATGCGGCGGG AGCGCGCTGGCGCAAGTCGGCGGCGCGTCGGTGGTTAAACGGATCATGCTTGCCGAGGCTGGGCGGCGCGTGTGCGGCGA TGCGTCGGTGGCGCCTTGGGCATCGCGCGCGCCATCGAAGCGGCCCGATGCCGTGACGCCGCACGCGGGCCCAGGTGCCC GCATGCTCGGCGCGCTATCTCTCGAGACGCCGGCTGCGCCGTCGGCGTGCTGCGATGCCGGCGCGACTTGCCGGCGGGCG CACGGCGCGGCGATCGAAGGTCTTCGGCATGCACACGGCGCGGGCGGCGGCGGGGCGCGTCGGCTCGCCGGCTTGGCCCT TGTGGTCGATGCGTTTCTCACCGATTCCAGTTTCAATTCGTTATTCGCGCTTGTGTTCCGGCTCGCGTATGAAGATGCGC ACGAGGCCGGCACGACGCCGGCACGACGCCGGCACGACGCCGACGACCGGCGAGCATGCGCGGAGTGCCGCGCCGCTTTC TGCTCACGGGGTGCGGGGCGCATCGAATCGCAGCAGGCTCGGCATGCCAGTGTTTCGCCGCGCGTCGCCCACGTCGTGCG ATGGCGCGACCGATGTTGCCGGCGTGTGCCGCGTATTCGACCGACACGCTGGCTTGGGCGAAGCGTTCGTGTGACGGCAG GCATCGTCGGCGTTTTGAGCGGAACACCCGCTCGGGATCGACGGTAA
Upstream 100 bases:
>100_bases TGCAGGTGGAGAACGAGGAGACATTCGAGGCACAGAGTGCCCGATCGAAAGCGCTGTTGGATTCGTTCCAACAGCGCTTT TTATTTGTGCGTTTTCGGCG
Downstream 100 bases:
>100_bases CGCATGGCGACGGCGGCGGCGAGACGGGCGGCCGGCCGCGTTTTTTGTAACCGCGGCGCGGGCGGCATCGGCCGGAAGAT CGCGGTAGAGGCAGCAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MYISLSLNAVYHAAFDCCPLAPAGAHRCGLTRLSRAQRVRYTRRSPTRWSGNGRARDTETNSMIGAWRFWGIGTANAWAA VSGVAFAEARTGFAACSDAASARFAAPPGLRAKDAIALPPREIDRWATRAVELDDAADSARVPNGAYSHPSENHLDAPIG SAVSTRSSAMGGTAARLPARAMSSMATASGLESFDAKRAFRGFETRPRDLSASAAIARHGFATRDRKTIAPAGLDAACGG SALAQVGGASVVKRIMLAEAGRRVCGDASVAPWASRAPSKRPDAVTPHAGPGARMLGALSLETPAAPSACCDAGATCRRA HGAAIEGLRHAHGAGGGGARRLAGLALVVDAFLTDSSFNSLFALVFRLAYEDAHEAGTTPARRRHDADDRRACAECRAAF CSRGAGRIESQQARHASVSPRVAHVVRWRDRCCRRVPRIRPTRWLGRSVRVTAGIVGVLSGTPARDRR
Sequences:
>Translated_468_residues MYISLSLNAVYHAAFDCCPLAPAGAHRCGLTRLSRAQRVRYTRRSPTRWSGNGRARDTETNSMIGAWRFWGIGTANAWAA VSGVAFAEARTGFAACSDAASARFAAPPGLRAKDAIALPPREIDRWATRAVELDDAADSARVPNGAYSHPSENHLDAPIG SAVSTRSSAMGGTAARLPARAMSSMATASGLESFDAKRAFRGFETRPRDLSASAAIARHGFATRDRKTIAPAGLDAACGG SALAQVGGASVVKRIMLAEAGRRVCGDASVAPWASRAPSKRPDAVTPHAGPGARMLGALSLETPAAPSACCDAGATCRRA HGAAIEGLRHAHGAGGGGARRLAGLALVVDAFLTDSSFNSLFALVFRLAYEDAHEAGTTPARRRHDADDRRACAECRAAF CSRGAGRIESQQARHASVSPRVAHVVRWRDRCCRRVPRIRPTRWLGRSVRVTAGIVGVLSGTPARDRR >Mature_468_residues MYISLSLNAVYHAAFDCCPLAPAGAHRCGLTRLSRAQRVRYTRRSPTRWSGNGRARDTETNSMIGAWRFWGIGTANAWAA VSGVAFAEARTGFAACSDAASARFAAPPGLRAKDAIALPPREIDRWATRAVELDDAADSARVPNGAYSHPSENHLDAPIG SAVSTRSSAMGGTAARLPARAMSSMATASGLESFDAKRAFRGFETRPRDLSASAAIARHGFATRDRKTIAPAGLDAACGG SALAQVGGASVVKRIMLAEAGRRVCGDASVAPWASRAPSKRPDAVTPHAGPGARMLGALSLETPAAPSACCDAGATCRRA HGAAIEGLRHAHGAGGGGARRLAGLALVVDAFLTDSSFNSLFALVFRLAYEDAHEAGTTPARRRHDADDRRACAECRAAF CSRGAGRIESQQARHASVSPRVAHVVRWRDRCCRRVPRIRPTRWLGRSVRVTAGIVGVLSGTPARDRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49277; Mature: 49277
Theoretical pI: Translated: 11.52; Mature: 11.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYISLSLNAVYHAAFDCCPLAPAGAHRCGLTRLSRAQRVRYTRRSPTRWSGNGRARDTET CEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC NSMIGAWRFWGIGTANAWAAVSGVAFAEARTGFAACSDAASARFAAPPGLRAKDAIALPP CCCEEHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCH REIDRWATRAVELDDAADSARVPNGAYSHPSENHLDAPIGSAVSTRSSAMGGTAARLPAR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH AMSSMATASGLESFDAKRAFRGFETRPRDLSASAAIARHGFATRDRKTIAPAGLDAACGG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SALAQVGGASVVKRIMLAEAGRRVCGDASVAPWASRAPSKRPDAVTPHAGPGARMLGALS HHHHHHCHHHHHHHHHHHHHCHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHEEEE LETPAAPSACCDAGATCRRAHGAAIEGLRHAHGAGGGGARRLAGLALVVDAFLTDSSFNS CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH LFALVFRLAYEDAHEAGTTPARRRHDADDRRACAECRAAFCSRGAGRIESQQARHASVSP HHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCH RVAHVVRWRDRCCRRVPRIRPTRWLGRSVRVTAGIVGVLSGTPARDRR HHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEHHHHHHHHCCCCCCCCC >Mature Secondary Structure MYISLSLNAVYHAAFDCCPLAPAGAHRCGLTRLSRAQRVRYTRRSPTRWSGNGRARDTET CEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC NSMIGAWRFWGIGTANAWAAVSGVAFAEARTGFAACSDAASARFAAPPGLRAKDAIALPP CCCEEHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCH REIDRWATRAVELDDAADSARVPNGAYSHPSENHLDAPIGSAVSTRSSAMGGTAARLPAR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH AMSSMATASGLESFDAKRAFRGFETRPRDLSASAAIARHGFATRDRKTIAPAGLDAACGG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SALAQVGGASVVKRIMLAEAGRRVCGDASVAPWASRAPSKRPDAVTPHAGPGARMLGALS HHHHHHCHHHHHHHHHHHHHCHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHEEEE LETPAAPSACCDAGATCRRAHGAAIEGLRHAHGAGGGGARRLAGLALVVDAFLTDSSFNS CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH LFALVFRLAYEDAHEAGTTPARRRHDADDRRACAECRAAFCSRGAGRIESQQARHASVSP HHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCH RVAHVVRWRDRCCRRVPRIRPTRWLGRSVRVTAGIVGVLSGTPARDRR HHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA