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The map label for this gene is yrbD [C]

Identifier: 237814075

GI number: 237814075

Start: 3710334

End: 3710885

Strand: Reverse

Name: yrbD [C]

Synonym: GBP346_A3860

Alternate gene names: 237814075

Gene position: 3710885-3710334 (Counterclockwise)

Preceding gene: 237814076

Following gene: 237814074

Centisome position: 90.54

GC content: 65.4

Gene sequence:

>552_bases
ATGACGATGAAAAAGACTGCTCTCGACTTCTGGGTCGGCCTCTTCGTAGTGTTGGGCTTTCTCGCGTTGCTGTTCCTCGC
GCTGAAGGTCGGCAACATGAGCTCGCTGTCGTTTCAGCCGACTTACGCGGTGAAGATGAAATTCGACAACATCGGCGGCC
TGAAGCCGCGCGCGGCCGTCAAGAGCGCGGGCGTCGTGGTCGGGCGCGTGAAGACCATCGGCTTCGACACGAACACCTAC
CAGGCGCTCGTCACGATCGAGCTCGACAAGCAGTACCCGTTCCCGAAGGATTCGTCGGCGAAGATCCTGACCTCGGGTCT
GCTCGGCGAGCAGTACATCGGCCTCGATCCGGGCGGCGACACGGAAATGCTGAAGGCGGGCGATACGATCACGATGACGC
AGTCGGCGATCGTGCTCGAGAACCTGATCGGCCAGTTCCTGTACAGCAAGGCCGCGGACGCGGGCGGCGCGAAGCCGGGC
GCCGCCGCATCGGGCGCGCCGGCGCCCGCGCCGGTGGCGGCATCGGCGGCATCGGGCGCGGCGGCACAGTGA

Upstream 100 bases:

>100_bases
GTCGCACGCGACGACCAAGACTGTCGTGTATGCGTCGCTCGCCGTACTCGGCCTCGATTTTCTGCTGACCGCGTTGATGT
TCAGCTAAGCCTTTTCTGGG

Downstream 100 bases:

>100_bases
ACGCCGCGCAAGCGGCATACGAGAGAAGAAAAGAGGGGAAGAACATCATGCAGACGATCCGCATCAGCCCAGCGGTGCTG
GCGATCACGGCCGCCGCGGC

Product: ABC transporter, periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTMKKTALDFWVGLFVVLGFLALLFLALKVGNMSSLSFQPTYAVKMKFDNIGGLKPRAAVKSAGVVVGRVKTIGFDTNTY
QALVTIELDKQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTEMLKAGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPG
AAASGAPAPAPVAASAASGAAAQ

Sequences:

>Translated_183_residues
MTMKKTALDFWVGLFVVLGFLALLFLALKVGNMSSLSFQPTYAVKMKFDNIGGLKPRAAVKSAGVVVGRVKTIGFDTNTY
QALVTIELDKQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTEMLKAGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPG
AAASGAPAPAPVAASAASGAAAQ
>Mature_182_residues
TMKKTALDFWVGLFVVLGFLALLFLALKVGNMSSLSFQPTYAVKMKFDNIGGLKPRAAVKSAGVVVGRVKTIGFDTNTYQ
ALVTIELDKQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTEMLKAGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPGA
AASGAPAPAPVAASAASGAAAQ

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=182, Percent_Identity=46.1538461538462, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 18865; Mature: 18734

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMKKTALDFWVGLFVVLGFLALLFLALKVGNMSSLSFQPTYAVKMKFDNIGGLKPRAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
KSAGVVVGRVKTIGFDTNTYQALVTIELDKQYPFPKDSSAKILTSGLLGEQYIGLDPGGD
HHCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEECCCCCCC
TEMLKAGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPGAAASGAPAPAPVAASAASGA
HHEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAQ
CCC
>Mature Secondary Structure 
TMKKTALDFWVGLFVVLGFLALLFLALKVGNMSSLSFQPTYAVKMKFDNIGGLKPRAAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
KSAGVVVGRVKTIGFDTNTYQALVTIELDKQYPFPKDSSAKILTSGLLGEQYIGLDPGGD
HHCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEECCCCCCC
TEMLKAGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPGAAASGAPAPAPVAASAASGA
HHEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]