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The map label for this gene is ypjD [C]

Identifier: 237813884

GI number: 237813884

Start: 3533586

End: 3534458

Strand: Reverse

Name: ypjD [C]

Synonym: GBP346_A3662

Alternate gene names: 237813884

Gene position: 3534458-3533586 (Counterclockwise)

Preceding gene: 237813888

Following gene: 237813883

Centisome position: 86.24

GC content: 71.48

Gene sequence:

>873_bases
GTGCTCCTGTACGGCGGCTTGGCCGTCGCCGGCTGGCGCGCGCGCCGCGTCGGCGCGGCACGTCCGCTCGTCGCGAGCGT
GCCGGCCGTTGCGCCCGCGCGCGAATCCGCTCCGGGCGGGATGGGCGGGCTCGGGCGCACGATCCTCGGCGCCGCGCTGC
TCGCGCACGGGGTGCTGCTGCACATGACGATCTTTCCGCACGACGCGATGGTGTTCGGCTTCGCGTTCGCGCTGTCGGCG
ATGTTCTGGCTCGGCGCGGGCATCTACTGGATCGAGAGCTTCTTCTTCCCGCTCGACGGGATGCGCCTGCTCGTGCTGCC
GCTCGCGGGCGTCGCGTCGCTCCTGCCGCTCGCGTTCGGCGGCGTGCGCGTGCTGCCGTACGCGGCCGCGCCGCTCTTCA
AGGTGCACTTCCTGATCGCGAACATCGCGTACGGGCTCTTCGCGATCGCGGCGCTCCACGCGGTGCTGATGCTGATGGTC
GAGCGGCGCCTGCATGCGCTGCGGCACGACGGGTTGCGCGACGCGTCGGGCTGGGTCGCGGGCTGGCTCGACACGCTGCC
GCCGCTTCTCACGCTCGAGAAGCTGCTGTTCCGCCTGATCGGCGCGGGTTTCGTGCTGCTCACGCTGACGCTCGCCACCG
GCATCCTGTTCAGCGAGCAGATCGACGCGCGCGCGCTCAAGCTCGATCACAAGACCGTGTTCGCGATCCTGTCCTGGCTG
ATGTTCGGCGGGCTCCTCGTCGCGCACAAGGCCTCCGGCTGGCGCGGCCGCGGCGCGGCGCGCTGGGTGCTCGCGTCGTT
CGTCGCGCTGCTGCTCGCGTACGTCGGCAGCCGCTTCGTTCTCGAGGTGCTGCTGCACCGTTCCGTGGTTTGA

Upstream 100 bases:

>100_bases
AGTGAAGCCCGCAGGCGCGAGTGGGACAAAAAGCCGGCCGTCGCGGGTAAGGGGCCTAGTGTAAACTTCGAACATGGATA
TTGTACTGTATGCCCTTACC

Downstream 100 bases:

>100_bases
ACACCTGATCCCGATGCGACAAATCCTTCTTCTCATCGTGCTGTTCTTCGCGAGTTCGTGGGTCGCGAGAAAGATTCGTC
AGGCGCAGGCGCGCGGCGAC

Product: cytochrome c assembly family protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLLHMTIFPHDAMVFGFAFALSA
MFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMV
ERRLHALRHDGLRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHKTVFAILSWL
MFGGLLVAHKASGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV

Sequences:

>Translated_290_residues
MLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLLHMTIFPHDAMVFGFAFALSA
MFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMV
ERRLHALRHDGLRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHKTVFAILSWL
MFGGLLVAHKASGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV
>Mature_290_residues
MLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLLHMTIFPHDAMVFGFAFALSA
MFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFGGVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMV
ERRLHALRHDGLRDASGWVAGWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHKTVFAILSWL
MFGGLLVAHKASGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31150; Mature: 31150

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLL
CEEECCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HMTIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFG
HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMVERRLHALRHDGLRDASGWVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
GWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHKTVFAILSWL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGGLLVAHKASGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLYGGLAVAGWRARRVGAARPLVASVPAVAPARESAPGGMGGLGRTILGAALLAHGVLL
CEEECCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HMTIFPHDAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGMRLLVLPLAGVASLLPLAFG
HHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GVRVLPYAAAPLFKVHFLIANIAYGLFAIAALHAVLMLMVERRLHALRHDGLRDASGWVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
GWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLATGILFSEQIDARALKLDHKTVFAILSWL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGGLLVAHKASGWRGRGAARWVLASFVALLLAYVGSRFVLEVLLHRSVV
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]