| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813873
Identifier: 237813873
GI number: 237813873
Start: 3522830
End: 3524257
Strand: Direct
Name: 237813873
Synonym: GBP346_A3651
Alternate gene names: NA
Gene position: 3522830-3524257 (Clockwise)
Preceding gene: 237813872
Following gene: 237813874
Centisome position: 85.95
GC content: 72.62
Gene sequence:
>1428_bases ATGCTCCTCGCGACGCGCTGCCCTCATTGTGAAACCGTCTTCCGACTGCAACGGGAGCAGCTCGCGCTGCACGACGGTCT CGTGCGGTGCGGTCACTGCCAGCAGGTATTCGACGCGGCGCGCGCGCTCGTGCCCACCGAGCCGGAGGCCGCCGCTGCGC AAGCAGCGCCGCGCGCGCCGGAGCAGCCGGCGGCGCGGCGTCTGTTCGACGCGACGTCTCCTGATCGCCGTCCGCTCGAA GCCGGCCATCGTGATTTCACGCCGGGCGCGTGGGACATGCGGGGCCCCTGGCTCGACGGCGCGATCGATCCGAAGCTGCA AATGACGAGCGCGAGCGTGAGTACCGCAGCCGGCGGCGCGGTGGCGGCCCACGCTGCCGCGCACGAAACGCGCAACGCCG CAACCGATACGCCGGCACAGGAGGCAAGCAAAGCGTCGGACGCCCTTTCGGTCTCCGAAGCCTCTCAAGCCGCCCGAGCT TCCGATACGTCAACGCACGACGCCCCTCCGGTACCCGAAACGCCCGAAACGCCAGCCGGCGGCACGCCGGCGCCCGGCGA GCGCCCGGCCCACGCGTGGCCCGAGGCCAACGCCGGCGCGCCGGCCATTCGGCCGTCCGATGCCGATCTGCCCCACGCCG GCGCGCGCGAATTTGCGCCGCCGCCGCGCCCGACGCTCGACCTCGATCTCGATCGAAGCGCAACCGCGAAACACGAGCCC GATACCGCCCGCGCCTCCCCCTCGCCGCCCGGCGACGCCGTCGAACCCATGCTCGCCTCGCACGCGGCGGCAGCCGCCGC GCTTGCCGGCGTCCCGCACGATCGCGAGCCGCGCTTCGGCGCTGCTCCGCCGGCCCGGGCGGACGCCGAGCCGTTCGCCG CGGCGCCCGAGGCCGACAACCGCGAGCATTTCGCCATGACCCGCGAAACGCGAACGGACGCCGCCCGCGGCGGCCTCGCG CGCGCGCTCGTCGCGCTCGTCGCGCTGGCGCTCGCCGCCTTGCTCGCGGCACAGCTCGCATGGTGGCAGCGCGAAACGAT CACGATCTACTGGCCCTCGACCGAGCCGCTCTTCAAACAGGCGTGCGCGGCGCTCGGCTGCGCGGTCACGCCGCCGCGCG CGATCGACGGCCTGCGGCTCGACGCGTCCGATTTGCGCCAGCTCGACGGCCCGCGCCTTCTCGAATTGAAGGTGCCGCTC ACGAACCGCTACCGCGTCGCGCTCGCCTATCCGTCGATCGAGCTCACGCTGCTCGACGAAGCGAACAACATCACCGCGCG CCGGGTGCTTGCGCCGCGCGATTACGTGCGCCCGGGCACGCGCGTCGAAGCGGGCATGCCCGCCGGCGCGACCCAAACGA TGATCGTCCGGATCGATACCGACGGCATCGCCGCATCGAACTTCCGCGTCCAGATCTTTTATCCGTAA
Upstream 100 bases:
>100_bases GCGAACACGAAGGTTGGGTATGCCTCGCCGGAACGCGGCGGGAAAGCCATTAGAATAAGCGCTGTCCTTCACTCAGGCCC CGCTGGCTGCCCGGCTGACC
Downstream 100 bases:
>100_bases CGCGCCGCGACGCGGCGCGCGGCCTCAACCCGTGCGCCGCTGCGGCGCACACACTTGGAGCACGAACATGAGCAAAGTCA CGCTGGGTGGCAACCCGATC
Product: zinc finger/thioredoxin domain protein
Products: NA
Alternate protein names: Zinc Finger/Thioredoxin; Zinc Finger/Thioredoxin Domain Protein; Transmembrane Protein; FHA Domain-Containing Protein
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MLLATRCPHCETVFRLQREQLALHDGLVRCGHCQQVFDAARALVPTEPEAAAAQAAPRAPEQPAARRLFDATSPDRRPLE AGHRDFTPGAWDMRGPWLDGAIDPKLQMTSASVSTAAGGAVAAHAAAHETRNAATDTPAQEASKASDALSVSEASQAARA SDTSTHDAPPVPETPETPAGGTPAPGERPAHAWPEANAGAPAIRPSDADLPHAGAREFAPPPRPTLDLDLDRSATAKHEP DTARASPSPPGDAVEPMLASHAAAAAALAGVPHDREPRFGAAPPARADAEPFAAAPEADNREHFAMTRETRTDAARGGLA RALVALVALALAALLAAQLAWWQRETITIYWPSTEPLFKQACAALGCAVTPPRAIDGLRLDASDLRQLDGPRLLELKVPL TNRYRVALAYPSIELTLLDEANNITARRVLAPRDYVRPGTRVEAGMPAGATQTMIVRIDTDGIAASNFRVQIFYP
Sequences:
>Translated_475_residues MLLATRCPHCETVFRLQREQLALHDGLVRCGHCQQVFDAARALVPTEPEAAAAQAAPRAPEQPAARRLFDATSPDRRPLE AGHRDFTPGAWDMRGPWLDGAIDPKLQMTSASVSTAAGGAVAAHAAAHETRNAATDTPAQEASKASDALSVSEASQAARA SDTSTHDAPPVPETPETPAGGTPAPGERPAHAWPEANAGAPAIRPSDADLPHAGAREFAPPPRPTLDLDLDRSATAKHEP DTARASPSPPGDAVEPMLASHAAAAAALAGVPHDREPRFGAAPPARADAEPFAAAPEADNREHFAMTRETRTDAARGGLA RALVALVALALAALLAAQLAWWQRETITIYWPSTEPLFKQACAALGCAVTPPRAIDGLRLDASDLRQLDGPRLLELKVPL TNRYRVALAYPSIELTLLDEANNITARRVLAPRDYVRPGTRVEAGMPAGATQTMIVRIDTDGIAASNFRVQIFYP >Mature_475_residues MLLATRCPHCETVFRLQREQLALHDGLVRCGHCQQVFDAARALVPTEPEAAAAQAAPRAPEQPAARRLFDATSPDRRPLE AGHRDFTPGAWDMRGPWLDGAIDPKLQMTSASVSTAAGGAVAAHAAAHETRNAATDTPAQEASKASDALSVSEASQAARA SDTSTHDAPPVPETPETPAGGTPAPGERPAHAWPEANAGAPAIRPSDADLPHAGAREFAPPPRPTLDLDLDRSATAKHEP DTARASPSPPGDAVEPMLASHAAAAAALAGVPHDREPRFGAAPPARADAEPFAAAPEADNREHFAMTRETRTDAARGGLA RALVALVALALAALLAAQLAWWQRETITIYWPSTEPLFKQACAALGCAVTPPRAIDGLRLDASDLRQLDGPRLLELKVPL TNRYRVALAYPSIELTLLDEANNITARRVLAPRDYVRPGTRVEAGMPAGATQTMIVRIDTDGIAASNFRVQIFYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50171; Mature: 50171
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLATRCPHCETVFRLQREQLALHDGLVRCGHCQQVFDAARALVPTEPEAAAAQAAPRAP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCC EQPAARRLFDATSPDRRPLEAGHRDFTPGAWDMRGPWLDGAIDPKLQMTSASVSTAAGGA CCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCH VAAHAAAHETRNAATDTPAQEASKASDALSVSEASQAARASDTSTHDAPPVPETPETPAG HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GTPAPGERPAHAWPEANAGAPAIRPSDADLPHAGAREFAPPPRPTLDLDLDRSATAKHEP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC DTARASPSPPGDAVEPMLASHAAAAAALAGVPHDREPRFGAAPPARADAEPFAAAPEADN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC REHFAMTRETRTDAARGGLARALVALVALALAALLAAQLAWWQRETITIYWPSTEPLFKQ CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH ACAALGCAVTPPRAIDGLRLDASDLRQLDGPRLLELKVPLTNRYRVALAYPSIELTLLDE HHHHHCCCCCCCHHHCCCEECHHHHHHCCCCEEEEEECCCCCCEEEEEECCCEEEEEECC ANNITARRVLAPRDYVRPGTRVEAGMPAGATQTMIVRIDTDGIAASNFRVQIFYP CCCCEEHEEECCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEEEECC >Mature Secondary Structure MLLATRCPHCETVFRLQREQLALHDGLVRCGHCQQVFDAARALVPTEPEAAAAQAAPRAP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCC EQPAARRLFDATSPDRRPLEAGHRDFTPGAWDMRGPWLDGAIDPKLQMTSASVSTAAGGA CCHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCH VAAHAAAHETRNAATDTPAQEASKASDALSVSEASQAARASDTSTHDAPPVPETPETPAG HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GTPAPGERPAHAWPEANAGAPAIRPSDADLPHAGAREFAPPPRPTLDLDLDRSATAKHEP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC DTARASPSPPGDAVEPMLASHAAAAAALAGVPHDREPRFGAAPPARADAEPFAAAPEADN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC REHFAMTRETRTDAARGGLARALVALVALALAALLAAQLAWWQRETITIYWPSTEPLFKQ CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH ACAALGCAVTPPRAIDGLRLDASDLRQLDGPRLLELKVPLTNRYRVALAYPSIELTLLDE HHHHHCCCCCCCHHHCCCEECHHHHHHCCCCEEEEEECCCCCCEEEEEECCCEEEEEECC ANNITARRVLAPRDYVRPGTRVEAGMPAGATQTMIVRIDTDGIAASNFRVQIFYP CCCCEEHEEECCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA