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The map label for this gene is ydeP [H]

Identifier: 237813528

GI number: 237813528

Start: 3188872

End: 3189567

Strand: Reverse

Name: ydeP [H]

Synonym: GBP346_A3304

Alternate gene names: 237813528

Gene position: 3189567-3188872 (Counterclockwise)

Preceding gene: 237813530

Following gene: 237813526

Centisome position: 77.82

GC content: 64.08

Gene sequence:

>696_bases
ATGATGGCTTTCATCGATTCGACTCCTGTGAGTGGTGAGCGAGCGCATCGCTCGGTGTGCGGCCGATGCGCCCGCAATGG
CGGGCGGGGAGATCGGCGCGCGTATCGTGTGCCGTTCGCCGTACGTGCCGCACGCGTGCGCATGCGGCGCGCATTCGGCC
GCCCGGCCGATGGCGGATGTGCGAATTGTCCGCACCTGCTTCTTTCGGCGCAAGAACGTACAATTAACGCAGGTACTATC
AATTCTGTAGGTACGTGCACGATGCGACCGAAGCGTTTCGACAGCAAGAGCGGGTGTTCCGTCGAGGTGACCCTTTCGGT
CATCGGCGGACTGTGGAAGCCAGTGATCCTGTTTCATCTCCTGAAGGAGAAAAAGCGTTTCATGGAGCTCACGCGGCTGA
TGCCGAACACCACCCAGCGAATGTTGACGCTGCAATTGCGCGAACTGGAGGCGGACGGCATCGTCGCGCGGCATGTCTAT
CCGCAGGTGCCGCCGAAGGTCGAATACGAACTGACGCCGTTCGGCAAGACGCTCGCCCCGGTGCTGATCAGCCTGCGGGA
GTGGGGCGATGCGTATCGGACACACCAACTGGGAGCCGGTTCGGCCAGTTCAGCCGAGCCGGCCCGTGGCGCGGCGTCGT
GCGACGCGCCGGCTCGGCCGCGAAGTCGTGCGGCCGGCGCGATGAAGGCGGCGTAG

Upstream 100 bases:

>100_bases
ACTCGCGTGAATGCGCACGCGGATTTCGCCGGCGGCCGGTGCACCGGGATCGGCGAGCGTGACGCGTTCGAGATGCTCGA
GGCCGGCGGGCTGACGCAAC

Downstream 100 bases:

>100_bases
CGCGCCGGCTGACGGACGTACCGGCCGGGTGCGCGTCCGCTCGGATCGAGAGGGCAATCCTGGCGGCTTGCGCGCGGGCG
CGTCGGCGGCTTCACGCGGT

Product: transcriptional regulator family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MMAFIDSTPVSGERAHRSVCGRCARNGGRGDRRAYRVPFAVRAARVRMRRAFGRPADGGCANCPHLLLSAQERTINAGTI
NSVGTCTMRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVY
PQVPPKVEYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEPARGAASCDAPARPRSRAAGAMKAA

Sequences:

>Translated_231_residues
MMAFIDSTPVSGERAHRSVCGRCARNGGRGDRRAYRVPFAVRAARVRMRRAFGRPADGGCANCPHLLLSAQERTINAGTI
NSVGTCTMRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVY
PQVPPKVEYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEPARGAASCDAPARPRSRAAGAMKAA
>Mature_231_residues
MMAFIDSTPVSGERAHRSVCGRCARNGGRGDRRAYRVPFAVRAARVRMRRAFGRPADGGCANCPHLLLSAQERTINAGTI
NSVGTCTMRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVY
PQVPPKVEYELTPFGKTLAPVLISLREWGDAYRTHQLGAGSASSAEPARGAASCDAPARPRSRAAGAMKAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=77, Percent_Identity=38.961038961039, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 25204; Mature: 25204

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAFIDSTPVSGERAHRSVCGRCARNGGRGDRRAYRVPFAVRAARVRMRRAFGRPADGGC
CCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCC
ANCPHLLLSAQERTINAGTINSVGTCTMRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHL
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
LKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKVEYELTPFGKTLAP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCHHHHH
VLISLREWGDAYRTHQLGAGSASSAEPARGAASCDAPARPRSRAAGAMKAA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHCCC
>Mature Secondary Structure
MMAFIDSTPVSGERAHRSVCGRCARNGGRGDRRAYRVPFAVRAARVRMRRAFGRPADGGC
CCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCC
ANCPHLLLSAQERTINAGTINSVGTCTMRPKRFDSKSGCSVEVTLSVIGGLWKPVILFHL
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
LKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKVEYELTPFGKTLAP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCHHHHH
VLISLREWGDAYRTHQLGAGSASSAEPARGAASCDAPARPRSRAAGAMKAA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]