| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813454
Identifier: 237813454
GI number: 237813454
Start: 3118241
End: 3120292
Strand: Reverse
Name: 237813454
Synonym: GBP346_A3229
Alternate gene names: NA
Gene position: 3120292-3118241 (Counterclockwise)
Preceding gene: 237813455
Following gene: 237813453
Centisome position: 76.13
GC content: 52.14
Gene sequence:
>2052_bases ATGGGCGAGTTCATAAAGCGAGTTCAGGCAAATAGAGTGCCAGGACCACTCCGACGCAATTTCTCGCTACAGAATTGGGG CGCGGAGTTTGCTGCTGCCCCGGCGCCAGATGATTCGGATAAGAATATCTACGAGGCCGCGCTTGTAATTTACGAGAAGT TGCAGAGTATACGAGCTCGACTAAAACTGTCTACGTCTAAAAATCTATCCGCGACGACGAAGTTGCGCGCGTTTGTGGCT GCCGCAAACCATAATTTCATAGTGGCGCAGGATAGAACCAGGTCAGCGTTTGCCACGGTTGGAGAGAGTCTGGCGAAGCG AGGTGCGGAGGGATTTGGAATAGATGAGGTGTTAGCTGCTGTCAAACTCAATCTTCCCGGCGGATTTGACTGGTCTCCAA ACGAAGTGGTCGAAAGTTTGGTAGATGGTATCGAAATTCCTGTGCGTGTCACTTTGCATGAGACGCCGGACTTGACAGGT AATGCTCGTATGAGTCAGGTCGAATGGAAGGACATTGTTCTTGAGCTTAACCTCGGTATTCTGTACCGCCATACGGAGGA TCTTTGGGATGAGTGTCTTTGGAATGGCTACAGGCTAGTCGACGCCGGGCGATTAAAGGTATTTCTGCCCCAAGACTCCG ATCTCATAAGCGGTCACAGAGTTGGTATCTGCAGACGTATGTCATTGACGATGGGTTTCTCGGTAATAGCGACCAGAGTA CACCACGAGATGGCCGCTCGGGGTAGTCTATCCAATATACGGGAAGTTCGTGAAATTAAGCGCCAGGGGCGGCGTCAGAT AATCAGGGTTTCGAAGCCGGGGGAAGCGACAGATGTACTGGAAGAACTTCTAGTGATGCGTGCTTATGCGTCGGAGCCGT ACTACACTGAATTGCTCGATACGCCGCTGGCTGCATTCGGTAGGCTGACATTATCGTCGATTCTCAATGCTTGGACCGTA ATATCGCGTACGGCTCTCATTTCGGTCGAGTCCGTTGGGCAGAAGCACGCTTTGGGCGCCAATATGGACAGCCCAGCTCA TACTTGGTTACCTGAATACGTTCCAGTACTGCAGATTGACGCTTTGGTTGATGCGCTATCAGTTGCGGTTGGTATATTAC CTGCCGACGGGAGGCGACTGATTGAGTTCTTCACTTTCCGGGGGAAACCCAATCAAGAAATCTGGGCTCAACCTCTGATT CCGGTTGGACCGACTGCTGTTGCTCCAATATTTGCGGCTGTCGTATCTCCGAATCTCAGAAGACTTGTCGATGTCTGGAT GCGACAAGTCGGGATAGATCTTGCCGAACGCGGGCCAGCATTCGAGGCGCACCTGAGGGCGGTCGTTGTTGAATCTATTC GTACGTCAAAGGTGTTGAGCGGCAAAGCTAGGGGCATTGAGGGCGACTACACTTTTCGGCCCTCTCATGGGCGAGCGGAG CAGATTGATCTGCTTTTCAATATCGGCGCCGTCGTATTTGTGGCTGAGGCCAAGTGTATTCTCGAGCCCACCGAGGCGAA GTCGGTTTACATGCATCGCAAGACCGTTAAGGGAGCCGCCGAACAAGTATTGCGCAAAGCTCAGGCATTAGAGGCGAATC GTGCGGAGTTTATTGTCGACGTTCAACGATTCGGTCTCGCTTTGCCTCAAGATTTTCAGATTGTGCCCCTGGTCATCGTG AGTACTTCCACTCATGTCGGGATTTCGTCTAACGGTGTTGCCGTAATCGACGAGTATATTCTGGGGCGCTTTTTAGACGG CGAGTTGGACGATGTGGCCATTCAAGGCCGTGGTTTCGCGATCCAGAAACGGATTAAAACGGTCTTCTATTCCAATTTAG AAGAGGCTCAAGCTAGGGCATCTCAGTATTTTGCTTCTCCCCCACAGTTGCGGCGCTTCCTTCGGGGATTGCGCGGACGA GTTGTTCCGCTTCACTCGATTGACGAGCAAGACTGGGAAGGGCGTATTTTGACGCTTGAATGCGCGCCGGAAGGTGGTCT CCCGCTAGCACGGCAGCCTTCTGAATCTATTGGCGAGACTGGAGGGGCTTAA
Upstream 100 bases:
>100_bases GAAATGACATCGCTTGGGCTGGTAATTGTGTCGATGAAAAGCTCCTTCGGGAGCTTTTCCTTTATTCTTGAGGCTGCGGC TACGCAATTGAAGGAGAAGA
Downstream 100 bases:
>100_bases TCTCAACACCATATCGTCAGCTTCTTGAGATCGATGCTGGCATGAAAACTGGCATCGCCGTGAACTCCGCATGAACAGTG GCTCTTCGTGGAGTCGCTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 683; Mature: 682
Protein sequence:
>683_residues MGEFIKRVQANRVPGPLRRNFSLQNWGAEFAAAPAPDDSDKNIYEAALVIYEKLQSIRARLKLSTSKNLSATTKLRAFVA AANHNFIVAQDRTRSAFATVGESLAKRGAEGFGIDEVLAAVKLNLPGGFDWSPNEVVESLVDGIEIPVRVTLHETPDLTG NARMSQVEWKDIVLELNLGILYRHTEDLWDECLWNGYRLVDAGRLKVFLPQDSDLISGHRVGICRRMSLTMGFSVIATRV HHEMAARGSLSNIREVREIKRQGRRQIIRVSKPGEATDVLEELLVMRAYASEPYYTELLDTPLAAFGRLTLSSILNAWTV ISRTALISVESVGQKHALGANMDSPAHTWLPEYVPVLQIDALVDALSVAVGILPADGRRLIEFFTFRGKPNQEIWAQPLI PVGPTAVAPIFAAVVSPNLRRLVDVWMRQVGIDLAERGPAFEAHLRAVVVESIRTSKVLSGKARGIEGDYTFRPSHGRAE QIDLLFNIGAVVFVAEAKCILEPTEAKSVYMHRKTVKGAAEQVLRKAQALEANRAEFIVDVQRFGLALPQDFQIVPLVIV STSTHVGISSNGVAVIDEYILGRFLDGELDDVAIQGRGFAIQKRIKTVFYSNLEEAQARASQYFASPPQLRRFLRGLRGR VVPLHSIDEQDWEGRILTLECAPEGGLPLARQPSESIGETGGA
Sequences:
>Translated_683_residues MGEFIKRVQANRVPGPLRRNFSLQNWGAEFAAAPAPDDSDKNIYEAALVIYEKLQSIRARLKLSTSKNLSATTKLRAFVA AANHNFIVAQDRTRSAFATVGESLAKRGAEGFGIDEVLAAVKLNLPGGFDWSPNEVVESLVDGIEIPVRVTLHETPDLTG NARMSQVEWKDIVLELNLGILYRHTEDLWDECLWNGYRLVDAGRLKVFLPQDSDLISGHRVGICRRMSLTMGFSVIATRV HHEMAARGSLSNIREVREIKRQGRRQIIRVSKPGEATDVLEELLVMRAYASEPYYTELLDTPLAAFGRLTLSSILNAWTV ISRTALISVESVGQKHALGANMDSPAHTWLPEYVPVLQIDALVDALSVAVGILPADGRRLIEFFTFRGKPNQEIWAQPLI PVGPTAVAPIFAAVVSPNLRRLVDVWMRQVGIDLAERGPAFEAHLRAVVVESIRTSKVLSGKARGIEGDYTFRPSHGRAE QIDLLFNIGAVVFVAEAKCILEPTEAKSVYMHRKTVKGAAEQVLRKAQALEANRAEFIVDVQRFGLALPQDFQIVPLVIV STSTHVGISSNGVAVIDEYILGRFLDGELDDVAIQGRGFAIQKRIKTVFYSNLEEAQARASQYFASPPQLRRFLRGLRGR VVPLHSIDEQDWEGRILTLECAPEGGLPLARQPSESIGETGGA >Mature_682_residues GEFIKRVQANRVPGPLRRNFSLQNWGAEFAAAPAPDDSDKNIYEAALVIYEKLQSIRARLKLSTSKNLSATTKLRAFVAA ANHNFIVAQDRTRSAFATVGESLAKRGAEGFGIDEVLAAVKLNLPGGFDWSPNEVVESLVDGIEIPVRVTLHETPDLTGN ARMSQVEWKDIVLELNLGILYRHTEDLWDECLWNGYRLVDAGRLKVFLPQDSDLISGHRVGICRRMSLTMGFSVIATRVH HEMAARGSLSNIREVREIKRQGRRQIIRVSKPGEATDVLEELLVMRAYASEPYYTELLDTPLAAFGRLTLSSILNAWTVI SRTALISVESVGQKHALGANMDSPAHTWLPEYVPVLQIDALVDALSVAVGILPADGRRLIEFFTFRGKPNQEIWAQPLIP VGPTAVAPIFAAVVSPNLRRLVDVWMRQVGIDLAERGPAFEAHLRAVVVESIRTSKVLSGKARGIEGDYTFRPSHGRAEQ IDLLFNIGAVVFVAEAKCILEPTEAKSVYMHRKTVKGAAEQVLRKAQALEANRAEFIVDVQRFGLALPQDFQIVPLVIVS TSTHVGISSNGVAVIDEYILGRFLDGELDDVAIQGRGFAIQKRIKTVFYSNLEEAQARASQYFASPPQLRRFLRGLRGRV VPLHSIDEQDWEGRILTLECAPEGGLPLARQPSESIGETGGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75366; Mature: 75235
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEFIKRVQANRVPGPLRRNFSLQNWGAEFAAAPAPDDSDKNIYEAALVIYEKLQSIRAR CCHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LKLSTSKNLSATTKLRAFVAAANHNFIVAQDRTRSAFATVGESLAKRGAEGFGIDEVLAA HEECCCCCCCHHHHHHHHEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH VKLNLPGGFDWSPNEVVESLVDGIEIPVRVTLHETPDLTGNARMSQVEWKDIVLELNLGI HEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHEEEEECCCE LYRHTEDLWDECLWNGYRLVDAGRLKVFLPQDSDLISGHRVGICRRMSLTMGFSVIATRV EEECCHHHHHHHHHCCEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HHEMAARGSLSNIREVREIKRQGRRQIIRVSKPGEATDVLEELLVMRAYASEPYYTELLD HHHHHHCCCHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH TPLAAFGRLTLSSILNAWTVISRTALISVESVGQKHALGANMDSPAHTWLPEYVPVLQID CHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCHHCCCCCCCCCCHHCCCCHHHHHHHH ALVDALSVAVGILPADGRRLIEFFTFRGKPNQEIWAQPLIPVGPTAVAPIFAAVVSPNLR HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCHH RLVDVWMRQVGIDLAERGPAFEAHLRAVVVESIRTSKVLSGKARGIEGDYTFRPSHGRAE HHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHH QIDLLFNIGAVVFVAEAKCILEPTEAKSVYMHRKTVKGAAEQVLRKAQALEANRAEFIVD HHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEE VQRFGLALPQDFQIVPLVIVSTSTHVGISSNGVAVIDEYILGRFLDGELDDVAIQGRGFA HHHHCCCCCCCCCEEEEEEEECCCEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHH IQKRIKTVFYSNLEEAQARASQYFASPPQLRRFLRGLRGRVVPLHSIDEQDWEGRILTLE HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEE CAPEGGLPLARQPSESIGETGGA ECCCCCCCCCCCCCHHHCCCCCC >Mature Secondary Structure GEFIKRVQANRVPGPLRRNFSLQNWGAEFAAAPAPDDSDKNIYEAALVIYEKLQSIRAR CHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LKLSTSKNLSATTKLRAFVAAANHNFIVAQDRTRSAFATVGESLAKRGAEGFGIDEVLAA HEECCCCCCCHHHHHHHHEEECCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH VKLNLPGGFDWSPNEVVESLVDGIEIPVRVTLHETPDLTGNARMSQVEWKDIVLELNLGI HEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHEEEEECCCE LYRHTEDLWDECLWNGYRLVDAGRLKVFLPQDSDLISGHRVGICRRMSLTMGFSVIATRV EEECCHHHHHHHHHCCEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HHEMAARGSLSNIREVREIKRQGRRQIIRVSKPGEATDVLEELLVMRAYASEPYYTELLD HHHHHHCCCHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH TPLAAFGRLTLSSILNAWTVISRTALISVESVGQKHALGANMDSPAHTWLPEYVPVLQID CHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCHHCCCCCCCCCCHHCCCCHHHHHHHH ALVDALSVAVGILPADGRRLIEFFTFRGKPNQEIWAQPLIPVGPTAVAPIFAAVVSPNLR HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCHH RLVDVWMRQVGIDLAERGPAFEAHLRAVVVESIRTSKVLSGKARGIEGDYTFRPSHGRAE HHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHH QIDLLFNIGAVVFVAEAKCILEPTEAKSVYMHRKTVKGAAEQVLRKAQALEANRAEFIVD HHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEE VQRFGLALPQDFQIVPLVIVSTSTHVGISSNGVAVIDEYILGRFLDGELDDVAIQGRGFA HHHHCCCCCCCCCEEEEEEEECCCEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHH IQKRIKTVFYSNLEEAQARASQYFASPPQLRRFLRGLRGRVVPLHSIDEQDWEGRILTLE HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEE CAPEGGLPLARQPSESIGETGGA ECCCCCCCCCCCCCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA